Input parameters:

  Query = sp_Q58WW2_DCAF6_HUMAN (Len=860)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q58WW2_DCAF6_HUMAN, Len=860):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRGGSYPHLLWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNP 80  
WD40-rpts                                              (_________________WD 1________________) 

Query       81 YSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSC 160 
WD40-rpts        (__________________WD 2__________________)      (_________________WD 3________

Query      161 GEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGM 240 
WD40-rpts      _________)          (_________________WD 4_________________)                    

Query      241 VARFIPSHLNNKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPVKRLRLRGDWSDTG 320 
WD40-rpts          (________________WD 5_______________)     (__________________________WD 6___

Query      321 PRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEASEVAQSNRGRGRSRPRGGTSQSDISTLPTVPSSPDLEVSETAME 400 
WD40-rpts      ______________________)                                                         

Query      401 VDTPAEQFLQPSTSSTMSAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHHTHHQSDNNNEKLSPKPGTGEPVLSLH 480 
WD40-rpts                                                                                      

Query      481 YSTEGTTTSTIKLNFTDEWSSIASSSRGIGSHCKSEGQEESFVPQSSVQPPEGDSETKAPEESSEDVTKYQEGVSAENPV 560 
WD40-rpts                                    (_________________WD 7________________) (_________

Query      561 ENHINITQSDKFTAKPLDSNSGERNDLNLDRSCGVPEESASSEKAKEPETSDQTSTESATNENNTNPEPQFQTEATGPSA 640 
WD40-rpts      _________WD 8__________________)                                                

Query      641 HEETSTRDSALQDTDDSDDDPVLIPGARYRAGPGDRRSAVARIQEFFRRRKERKEMEELDTLNIRRPLVKMVYKGHRNSR 720 
WD40-rpts                                                   (____________________________WD 9__

Query      721 TMIKEANFWGANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYDIKIWSPLEESRIFNRK 800 
WD40-rpts      __________________________)   (_________________WD10________________)           

Query      801 LADEVITRNELMLEETRNTITVPASFMLRMLASLNHIRADRLEGDRSEGSGQENENEDEE 860 
WD40-rpts                                                                  

10 WD40-repeats found in QUERY=sp_Q58WW2_DCAF6_HUMAN (Len=860):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    41-79       8.96  484.61  1.8e-05       22.5%     54.65
  WD 2:  Seg  5    83-124      7.01  404.36  0.00022       37.5%     55.72
  WD 3:  Seg  9   131-170      6.40  378.93  0.00049       22.5%     52.11
  WD 4:  Seg 13   181-220      6.29  374.43  0.00056       22.5%     48.33
  WD 5:  Seg 18   245-281      8.02  445.95  6.1e-05       22.5%     41.47
  WD 6:  Seg 21   287-343      4.91  317.47  0.00327       17.5%     15.75
  WD 7:  Seg 29   511-549      3.09  242.32  0.03327       15.0%     -8.24
  WD 8:  Seg 30   551-592      2.95  236.45  0.03978       12.5%     -16.37
  WD 9:  Seg 32   686-747      5.05  323.37  0.00273       25.0%     45.56
  WD10:  Seg 36   751-789      8.61  470.40  2.8e-05       27.5%     55.35

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   41-79     -L--K--------------------LEATL-NVHDG------------------CVNTICWN--D--T-GEYILSGSDDTKLVISN
   WD 2   83-124    -R--K--------------------VLTTIRSGHRA------------------NIFSAKFL--PCTN-DKQIVSCSGDGVIFYTN
   WD 3  131-170    -T--N--------------------RQCQF-TCHYG------------------TTYEIMTV--P-ND-PYTFLSCGEDGTVRWFD
   WD 4  181-220    -D--C--------------------KDDIL-INCRR------------------AATSVAIC--P--PIPYYLAVGCSDSSVRIYD
   WD 5  245-281    -------------------------IPSHL-NNKSC------------------RVTSLCYS--E--D-GQEILVSYSSDYIYLFD
   WD 6  287-343    -A--R--------------------ELKTP-SAEERREELRQPPVKRLRLRGDWSDTGPRAR--P--E-SERERDGEQSPNVSLMQ
   WD 7  511-549    -S--H--------------------CKSEG-QEESF------------------VPQSSVQP--P--E-GDSETKAPEESSEDVTK
   WD 8  551-592    QEGVS--------------------AENPV-ENHIN------------------ITQSDKFT--A--K-PLDSNSGERNDLNLDRS
   WD 9  686-747    FF--RRRKERKEMEELDTLNIRRPLVKMVY-KGHRN------------------SRTMIKEANFW--G-ANFVMSGSDCGHIFIWD
   WD10  751-789    -A--E--------------------HLMLL-EADNH------------------VVNCLQPH--P--F-DPILASSGIDYDIKIWS

   WD40 Template    TG--E--------------------CLRTL-SGHTS------------------GVTSVSFS--P--D-GKRLVSGSEDGTIKVWD