JobID: 1XNWP1450990159 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = sp_Q02887_ATG21_YEAST (Len=496)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q02887_ATG21_YEAST, Len=496):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVLQFNQDATCCVVAASSHQISIFNCDPFGKCFEIDTKNSKKKTSNNNGSASNSESRNNEESILITNGSRDRTDAEEEE 80  
WD40-rpts      (__________WD 1__________)    (_________________WD 2________________)           

Query       81 DNEDNALVTGNILKEGEFVIEMLFSTSLIAIADRGQGLNKGKKLKIVNTKRKCTICEIVFPHEIVDVVMNRKRMCVLLES 160 
WD40-rpts                                                      (_________________WD 3__________

Query      161 DQIFIYDISCMKPLETIDLWEDHYKRSQANSFSNASNTGTLEGDSANLNRVATNLLANATQKSVNGSNPSVRTRRNSLRS 240 
WD40-rpts      ______)   (_________________WD 4________________)                          (____

Query      241 KIRPRMVLSNDDRSILCFTAYSSPKKNKPNSEALYDVVIYDTLNVTPVNYLNSVHKGNVACLAVSHDGKLLATASDKGTI 320 
WD40-rpts      ________________WD 5____________________)    (_________________WD 6_____________

Query      321 IRVFHTGVDSDYMSSRSLFKEFRRGTRLCNLYQLAFDKSMTMIGCVGDTDTIHLFKLDDASNSLPGDNSSNGHWNEEEYI 400 
WD40-rpts      ____)(_______________________WD 7______________________)(___________________WD 8

Query      401 LASNSNPSMGTPKEIPLSKPRIANYFSKKIKSSIPNQNLSRNFAYITVNESNRSCLGFPDEFPNQVYIASDDGTFSIYSI 480 
WD40-rpts      ___________________)                   (_________________WD 9_________________) 

Query      481 PSKPGECVLTKNNKFT 496 
WD40-rpts

9 WD40-repeats found in QUERY=sp_Q02887_ATG21_YEAST (Len=496):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-26       4.21  288.66  0.00799       10.0%     33.41
  WD 2:  Seg  4    31-69       3.54  260.86  0.01884       12.5%     20.20
  WD 3:  Seg 12   129-167      3.76  269.80  0.01431       20.0%     50.82
  WD 4:  Seg 16   171-209      6.17  369.60  0.00065       10.0%      9.95
  WD 5:  Seg 19   236-281      5.60  345.94  0.00135       10.0%     31.28
  WD 6:  Seg 22   286-325      6.91  400.08  0.00025       32.5%     52.32
  WD 7:  Seg 26   326-376      5.54  343.56  0.00146       15.0%     45.69
  WD 8:  Seg 30   377-420      3.31  251.25  0.02531        7.5%     -12.00
  WD 9:  Seg 32   440-479      3.50  259.06  0.01991       15.0%     51.29

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-26     ------------------------------------MKVLQFNQDAT-CCVVAASSHQ-ISIFN
   WD 2   31-69     -G------K-CFEID----TK-----------NSKKKTSNNNGSASN-SESRNNEESI-LITNG
   WD 3  129-167    TK------RKCTICE----IV-----------FPHEIVDVVMNR--K-RMCVLLESDQ-IFIYD
   WD 4  171-209    -M------K-PLETI----DL-----------WEDHYKRSQANSFSN-ASNTGTLEGD-SANLN
   WD 5  236-281    NSLRSKIRP-RMVLS----ND-----------DRSILCFTAYSSPKK-NKPNSEALYD-VVIYD
   WD 6  286-325    -T------P-VNYLN----SV-----------HKGNVACLAVSHDGK-LLATASDKGTIIRVFH
   WD 7  326-376    TG------V-DSDYM----SSRSLFKEFRRGTRLCNLYQLAFDKSMT-MIGCVGDTDT-IHLFK
   WD 8  377-420    LD------D-ASNSLPGDNSS-----------NGHWNEEEYILASNS-NPSMGTPKEI-PLSKP
   WD 9  440-479    -S------R-NFAYI----TV-----------NESNRSCLGFPDEFPNQVYIASDDGT-FSIYS

   WD40 Template    TG------E-CLRTL----SG-----------HTSGVTSVSFSPDGK-RLVSGSEDGT-IKVWD