WDRR: WD40 Repeat Recognition
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| JobID: 1TXW61659460628 Submitted: 2022-08-03 01:17:08 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79788001 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh03G010900 (Len=489) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh03G010900, Len=489): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKGGTLQINWHDSKPVLTLDFHPXSGLLATGGADFDIKIWLLNSGDGQKNVPGATYQNSLSYHGSAVNSLRFSPSGELLA 80
WD40-rpts (_________________WD 1_________________) (_________________WD 2_____
Query 81 SGADGGELIIWKLHHLESGQTWKVLKTLSFHRKDVLDLQWSSDGAYLMSGSVDNSCIIWDVSKGSVHQILDAHLHYVQGV 160
WD40-rpts ___________) (_________________WD 3________________) (________________
Query 161 ALDPLGKYAASLSSDRSCRIYAYKPPTKVKSSEKMNYVCQHVVTKAENISVDDSKSVRNHLFHDETLPSFFRRLAWSPDG 240
WD40-rpts _WD 4________________) (_________________WD 5________________)(_____________WD
Query 241 SFLLVPAGVCKISPASEPVNTAYIFSRKDLSRPAIQLPGASKPVVAVCFCPKLFSLRGLNSAGLFKLPHRIIFALATLNS 320
WD40-rpts 6_____________) (_________________WD 7________________)
Query 321 LYIYDTESVVPLVIMAGLHYAAITDVAWSADAHYLALSSQDGYCTLVEFENDELGSPLSLLEDKIGTSTNQNTSLTGVVT 400
WD40-rpts (_________________WD 8_________________) (__________________WD 9_____
Query 401 VNDDQNRKTEVEERHEENKSVEKPENKSVEKPENMVIEKPSSGENLAESECRGHEMEKKKSKQVSISSSSNSVTSKPAKR 480
WD40-rpts ____________) (_________________WD10________________)
Query 481 RITPMAIDP 489
WD40-rpts
 10 WD40-repeats found in QUERY=CmaCh03G010900 (Len=489): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 2-41 9.43 504.32 9.9e-06 27.5% 55.51 WD 2: Seg 5 54-92 9.07 489.35 1.6e-05 37.5% 46.27 WD 3: Seg 8 102-140 9.58 510.25 8.3e-06 40.0% 55.89 WD 4: Seg 12 144-182 9.13 491.84 1.5e-05 27.5% 52.20 WD 5: Seg 16 186-224 6.51 383.76 0.00042 5.0% 36.84 WD 6: Seg 20 225-256 5.11 325.86 0.00253 17.5% 24.48 WD 7: Seg 23 271-309 7.20 412.06 0.00017 22.5% 18.93 WD 8: Seg 27 329-368 7.87 439.91 7.3e-05 27.5% 58.70 WD 9: Seg 31 373-413 3.86 274.12 0.01253 17.5% 24.51 WD10: Seg 32 415-453 3.52 260.04 0.01932 7.5% -6.64Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2-41 KGGTLQINWH-DSKPVLTL---DFHPXSGLLATGGADFDIKIWL WD 2 54-92 -ATYQNSLSY-HGSAVNSL---RFSPSGELLASGADGGELIIWK WD 3 102-140 -WKVLKTLSF-HRKDVLDL---QWSSDGAYLMSGSVDNSCIIWD WD 4 144-182 -GSVHQILDA-HLHYVQGV---ALDPLGKYAASLSSDRSCRIYA WD 5 186-224 -PTKVKSSEK-MNYVCQHV---VTKAENISVDDSKSVRNHLFHD WD 6 225-256 --------ET-LPSFFRRL---AWSPDGSFLLVPAGVCKISPAS WD 7 271-309 -SRPAIQLPG-ASKPVVAV---CFCPKLFSLRGLNSAGLFKLPH WD 8 329-368 -VVPLVIMAGLHYAAITDV---AWSADAHYLALSSQDGYCTLVE WD 9 373-413 --ELGSPLSL-LEDKIGTSTNQNTSLTGVVTVNDDQNRKTEVEE WD10 415-453 -HEENKSVEK-PENKSVEK---PENMVIEKPSSGENLAESECRG WD40 Template TGECLRTLSG-HTSGVTSV---SFSPDGKRLVSGSEDGTIKVWD |
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