WDRR: WD40 Repeat Recognition
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| JobID: 1TTCO1659514365 Submitted: 2022-08-03 16:12:45 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79735211 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_3G009490 (Len=2973) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_3G009490, Len=2973): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEEDEETKTAAENSENDSDNAVTSDAQKTSQAFQDDTNVDSDKVNIVNDGLVLGEVTTVTTVEDEDQFEQVCLKDQGKTV 80
WD40-rpts
Query 81 DELSGGLLDSERSSNSEDARLSSGAFQESSQYTTRTSGAESDDSTVGQLQYDSHSLSPGADKRLGHSIKPSTSSASFDSG 160
WD40-rpts
Query 161 YSPLGSPQKFKPKSVMPNVSPELLHLVDSAIMGKPESLDKLKNVVSGKETFGSSEEMEGVAFSVVDSLLATMGGVESFEE 240
WD40-rpts
Query 241 DEENNPPSVMLNSRAAIVAGELIPWLPCLGDNEMIMSPRTRMVRGLLAILQACTRNRAMCSMAGLLGVLLRSAETVFVQD 320
WD40-rpts
Query 321 VGSSDKLSWDGAPLCYCIQYLSGHSLNVSDLRAWFQVITSTLTTKWAAKLLLALEKALCGKESKGPASTFEFDGESSGLL 400
WD40-rpts
Query 401 GPGESRWPFSNGYAFATWIYIESFADTLNTATAAAAIAAAAAAKSGKSSAMSAAAAASALAGEGTAHMPRLFSFLSADNQ 480
WD40-rpts
Query 481 GIEAYFHAQFLVVECGSGKGRKASLHFTHAFKPQCWYFIGLEHTCKQGLIGKIESELRLYIDGVLYESRPFEFPRISKPL 560
WD40-rpts
Query 561 AFCCIGTNPPPTMAGLQRRRRQCPLFAEMGPIYIFKESVGAERMTRLASRGGDALPSFGNGAGLPWLATNDYVHHMAGES 640
WD40-rpts
Query 641 SLLDADIAGCLHLLYHPSLLNGRFCPDASPLGAAGTLRRPAEVLGQVHVATRMRPVEALWALAYGGSMSLLPLVVSNVDE 720
WD40-rpts
Query 721 ASLQPQEGSNPLSFATANLAASIFRIISMAVQHPKNNEEFSRVRGPEILSRILNYLLRTLSSLDPGKHDGVEDEELVAAI 800
WD40-rpts
Query 801 VSLCQSQKSNHILKVQLFSTLLLDLKIWCLCNYGLQKKLLSSLADMVFTESSVMREANAIQMLLDGCRRCYWTIYEKDSV 880
WD40-rpts
Query 881 NTFSLNEDQRPVGEVNALVDELLVVIELLIVAAPPSLASDDVRCLLGFMVDCPQPNQVARVLHLVYRLVVQPNTSRAQTF 960
WD40-rpts
Query 961 AEAFIACGGIETLLVLLQREVKAGDVSDPEVITTPETSFFHESGVDSGDGVPERILDGDIGAVEEEKLNVPEKDWQFEST 1040
WD40-rpts
Query 1041 EIGGVRHFGAASPGVRIERMLSISESSFVKNLGGISLSITADNARNNVYNVDKRDGIVVGIIGLVGALVASGHLKFDSFS 1120
WD40-rpts
Query 1121 PSDATTNILGSGLPDGGSSMFDDKVSLLLYALQKAFQAAPNKLMTNNVYTALMGASINASSTEDGLNFYDSGHRFEHLQL 1200
WD40-rpts
Query 1201 LLVLLRSLPYASRAFQSRALQDLLFLACSHPENRNSLTKMEEWPEWILEILISNHELGESKNSQTTSVGDVEDLIHNFLI 1280
WD40-rpts
Query 1281 IMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGDQRVRREESLPIFKRRLLGGLLDFSGRELQAQTQVIAAAAAGVAA 1360
WD40-rpts
Query 1361 EGLSPTDAKAEAENAAQLSVSLVENAIVILMLVEDHLRLQSKLSCASSVADGYTSPLSLVSPLNNRSNSLSSIGGREPQE 1440
WD40-rpts
Query 1441 ITSVRGSISEPSGLPLDVLASMADANGQISSVVMERLTAAAAAEPYESVSCAFVSYGSYATDLADGWKYRSRLWYGVGLP 1520
WD40-rpts
Query 1521 SNKALFGGGGSGWESWRFLEKDNSGNWIELPLVKKSVAMLQALLLDESGLGGGLGIGGGSGTGMGGMSALYQLLDSDQPF 1600
WD40-rpts
Query 1601 LCMLRMVLLSMREDDNGEDGILMRNISIDDGIPEGRKPRSALLWSVLSPVLNMPISDSKRQRVLVASCVLYSEVWHSVGK 1680
WD40-rpts
Query 1681 DRNPLRKQYLESILPPFVAILRRWRPLLAGIHELATADGLNPLTVDDRALAADTLPIEAALGMIAPAWAAAFASPPAAMA 1760
WD40-rpts
Query 1761 LAMIAAGASGGETTAPATTSQLRRDSSLLERKTTRLHTFSSFQKPLEVPNRPPSLPKDKAAAKAAALAAARDLERNAKIG 1840
WD40-rpts
Query 1841 SGRGLSAVAMATSAQRRNTGDTERVKRWNNSEAMAVAWMECLQPFDTKSVYGKDFNALSYKFIAVLVASFALARNIQRSE 1920
WD40-rpts
Query 1921 VDRRTQVDVIDHHRMCKGIRAWRKLVHYLIEMKCLFGPIGEHFSKPSRVFWKLDLMESSSRMRRCLRRNYRGSDHCGAAA 2000
WD40-rpts
Query 2001 NYEDQVDLKNGEEALSSSNASILAADAIAIEAVNDDDEQMEIDSLDGRTDDVEQSAVDSSKLTETSEQNLQASAESSSTQ 2080
WD40-rpts
Query 2081 IVNDQELIQGSSPVAPGYVPSELDERIILELPSTMVRPLRVIQGTFQVTTRRINFIVDSSDLNATTDSSCKPKDQEKDRT 2160
WD40-rpts
Query 2161 WMMSSLHQIHSRRYLLRRSALELFMVDRSNYFFDFGSTEGRKNAYRAIVQVRPPHLNDVYLATQRPEQLLKRTQLMERWA 2240
WD40-rpts
Query 2241 RWEISNFEYLMHLNTLAGRSYNDITQYPVFPWILSDYTSESLDLSDPSSFRDLSKPVGALNADRLKKFQERYSSFEDPVI 2320
WD40-rpts
Query 2321 PKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFLDISGTWNGVLEDMSDVKELVPELFYLPEILTNENS 2400
WD40-rpts
Query 2401 IDFGTTQLGQNLDFVKLPPWAKNPIDFIHKHRMALESEHVSAHLHEWIDLIFGYKQRGKEAISANNVFFYITYEGTVDID 2480
WD40-rpts
Query 2481 KISDPAQQRATQDQIAYFGQTPSQLLTVPHLKKKPLADVLHLQTIFRNPKSVRSYPVPTPERCNLPAAAIHATSDTVVIV 2560
WD40-rpts
Query 2561 DINAPAAHVAQHKWQPNTPDGQGAPFLFQHGKSSLNSTSGTFMRMFKGQAGSTADEWQFPQAPAFAASGIRSSSIVSITW 2640
WD40-rpts
Query 2641 DKDIITGGHVDNSIKLISSDGGRTLETAYGHCAPVTCLSVSHDSNYLVTGSRDTTLLVWRIHRLSTPRSSSVSETSMGTG 2720
WD40-rpts (_________________WD 1________________)
Query 2721 MSTSGSGSNLSSILADKSRKHRIEGPIHVLRGHHREIVCCCVNSDLGIVVSCSQSSDILIHSIRRGRLIRRLAGIEAHAV 2800
WD40-rpts (_________________WD 2________________)(_________________
Query 2801 CLSSEGVILTWNESQCTLSTFTLNGNLIARAPFPFSSSISCMEISVDGESALIGINSSRQTNKTRSNSWDFKLKKPELDL 2880
WD40-rpts WD 3_________________) (_________________WD 4________________)
Query 2881 TPDETLEDDRLDVPVPSVCFLDLHTLKVFHTLRLKEGQDITALALNKDNTNLLVSTADRQLIVFTDPALSLKVVDQMLKI 2960
WD40-rpts (___________________WD 5__________________)
Query 2961 GWEGEGLSPLIKS 2973
WD40-rpts
 5 WD40-repeats found in QUERY=CsaV3_3G009490 (Len=2973): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 40 2662-2700 8.38 460.73 3.8e-05 45.0% 58.16 WD 2: Seg 47 2744-2782 5.78 353.54 0.00107 22.5% 57.89 WD 3: Seg 51 2783-2822 3.49 258.67 0.02016 12.5% 51.19 WD 4: Seg 55 2826-2864 3.18 246.16 0.02958 15.0% 45.28 WD 5: Seg 59 2903-2945 4.01 280.21 0.01038 12.5% 55.97Multiple sequence alignment of 5 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2662-2700 -GRTLETAY---GHCAPVTCLSVSHDSNYLVTGSRDTTLLVWR WD 2 2744-2782 EGP-IHVLR---GHHREIVCCCVNSDLGIVVSCSQSSDILIHS WD 3 2783-2822 IRRGRLIRR---LAGIEAHAVCLSSEGVILTWNESQCTLSTFT WD 4 2826-2864 -NLIARAPF---PFSSSISCMEISVDGESALIGINSSRQTNKT WD 5 2903-2945 LHTLKVFHTLRLKEGQDITALALNKDNTNLLVSTADRQLIVFT WD40 Template TGECLRTLS---GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |