Input parameters:

  Query = CsaV3_5G003380 (Len=503)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G003380, Len=503):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDQALPQRTHLSSSTSSPSSSSSSSSSSSIQLNLPSSMSRASHSLETLTPSRQIDRMININHHLSPSRAIYSDRFIPSR 80  
WD40-rpts                                                              (_________________WD 1__

Query       81 SGSNFALFDISPVSNSHSDGREDTSTAYATLLRTALFGPDSGVIPPATPEKRSSPMCLPNHNIFRYKTETRRSMHSLSPF 160 
WD40-rpts      _______________)                                                      (_________

Query      161 GFDAAAPGLNPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSV 240 
WD40-rpts      ________WD 2________________)(______________WD 3_____________)(_________________

Query      241 CSVGWAQRGTHLAVGTSNGKVQIWDASRCKRVRTMEGHRLRIGALAWSSSLLSSGSRDKSILQRDIRAQDDFVTKLSGHK 320 
WD40-rpts      __WD 4__________________)   (________________WD 5_______________)    (__________

Query      321 SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 400 
WD40-rpts      _______WD 6________________)   (__________________WD 7__________________)   (___

Query      401 SCMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 480 
WD40-rpts      ______________WD 8_________________)   (_________________WD 9________________)  

Query      481 PSPKSQNTDSEIGASFLGRTTIR 503 
WD40-rpts                             

9 WD40-repeats found in QUERY=CsaV3_5G003380 (Len=503):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    57-96       3.70  267.30  0.01545       10.0%     -4.97
  WD 2:  Seg  3   151-189      6.25  372.80  0.00059       15.0%     22.32
  WD 3:  Seg  5   190-222      3.80  271.66  0.01351        2.5%     43.61
  WD 4:  Seg  8   223-265      7.64  430.43  9.8e-05       27.5%     54.33
  WD 5:  Seg 12   269-305      6.90  399.55  0.00026       30.0%     56.76
  WD 6:  Seg 16   310-348      9.32  499.74  1.1e-05       35.0%     57.54
  WD 7:  Seg 20   352-393      7.39  419.81  0.00014       25.0%     46.80
  WD 8:  Seg 24   397-436      5.36  336.10  0.00184       27.5%     51.78
  WD 9:  Seg 28   440-478     10.02  528.57  4.7e-06       40.0%     57.80

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   57-96     RMININHHL---SPSRAIYSDRFIPSRSGSNF---ALFDISPVSNS
   WD 2  151-189    -RRSMHSLS---PFGFDAAAPGLNPSPVKTPR---KVPRSPYKVLD
   WD 3  190-222    -------AP---ALQDDFYLNLVDWSSHNVLA---VGLGNCVYLWN
   WD 4  223-265    ACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAV---GTSNGKVQIWD
   WD 5  269-305    -CKRVRTME---GHRLRIGALAWSSS--LLSS---GSRDKSILQRD
   WD 6  310-348    -DDFVTKLS---GHKSEVCGLKWSYDNRELAS---GGNDNRLFVWN
   WD 7  352-393    -TQPVLKFY---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN
   WD 8  397-436    -NTHLSCMD---TG-SQVCNLAWSKNVNELVS-THGFSQNQIIVWR
   WD 9  440-478    -MSKLATLT---GHTFRVLYLAISPDGQTIVT---GAGDETLRFWN

   WD40 Template    TGECLRTLS---GHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD