Input parameters:

  Query = CsaV3_3G041110 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G041110, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWYADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWN 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 VQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPSAIHVKRIARDPSEQTGESVLLLKGPQGRINRAVWGPLNKT 160 
WD40-rpts         (________________WD 3_______________)               (_________________WD 4___

Query      161 IISAGEDAVVRIWDSETGKLLKESDKEIGHKKTVTSLTKSSDGSHFITGSLDKSAKLWDTRTLTLIKTYVTERPVNAVTM 240 
WD40-rpts      _____________)   (__________________WD 5__________________)   (_________________

Query      241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPD 320 
WD40-rpts      WD 6_________________)               (_________________WD 7________________)    

Query      321 YFNIKI 326 
WD40-rpts            

7 WD40-repeats found in QUERY=CsaV3_3G041110 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.61  470.28  2.9e-05       25.0%     51.84
  WD 2:  Seg  5    42-80      10.33  541.47  3.1e-06       42.5%     56.42
  WD 3:  Seg  9    84-120      5.44  339.23  0.00167       22.5%     47.13
  WD 4:  Seg 12   136-174      8.50  465.91  3.3e-05       27.5%     58.66
  WD 5:  Seg 16   178-219      8.91  482.61  1.9e-05       40.0%     56.20
  WD 6:  Seg 20   223-262      5.81  354.55  0.00104       22.5%     47.87
  WD 7:  Seg 25   278-316      9.90  523.46  5.5e-06       32.5%     55.87

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MRPI--LMK---GHERPLTFLKYNR--DGDLLFSCAKDHNPTVWY
   WD 2   42-80     -GERLGTYR---GHNGAVWCCDVSR--DSMRLITGSADQTAKLWN
   WD 3   84-120    -GQQLFSF----NFDSPARAVDFSV--GDK-LAVITTDPFMELPS
   WD 4  136-174    -GESVLLLK---GPQGRINRAVWGP--LNKTIISAGEDAVVRIWD
   WD 5  178-219    -GKLLKESDKEIGHKKTVTSLTKSS--DGSHFITGSLDKSAKLWD
   WD 6  223-262    -LTLIKTYV---TERP-VNAVTMSPLLDHVVLGGGQDASAVTTTD
   WD 7  278-316    -QEEIGGVK---GHFGPINALAFNP--DGKSFSSGGEDGYVRLHH

   WD40 Template    TGECLRTLS---GHTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD