WDRR: WD40 Repeat Recognition
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| JobID: 1N54N1659520931 Submitted: 2022-08-03 18:02:11 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79727861 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_7G027700 (Len=3605) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_7G027700, Len=3605): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKWVTLLKDIKEKVGLTPSHSAGSAPSASASSSSSSSILASSARDNHVPYSARRPDSASSPARNRHELELDFKRYWEEFR 80
WD40-rpts
Query 81 SSSSEKEKEAALNMTVDTFCRLVKQHANVAQLVTLIVETHIFSFVVGRAFVTDIEKLKISSKRRSLDVIKVLKYFTEVAE 160
WD40-rpts
Query 161 DVICPGANLLTAVEVLISGPIDKQSLLDSGIFCCLIHILNALLDPDEASQREKTASYEEKSVLGEDLNGHGGQGRRLEVE 240
WD40-rpts
Query 241 GSVVHIMKALASHPSAAQSLIEDDSLQMLFQMVANGSLTVFSQYKEGLVPLHNIQLHRHAMQILNLLLVNDSGSTAKYIR 320
WD40-rpts
Query 321 KHHLIKILLMAVKDYNPNCGDSAYTMGIVDLLLECVRLSYRPEANGISLREDIHNAHGYHFLVQFALILSKLARSQASQS 400
WD40-rpts
Query 401 VKSSLPQDYIQATDVSQINDEEKQDYIDQDVPSLQLSPTLSRLLDVLVNLAQTGPQESDCSSTGKRSKSTHSKSIDHSRS 480
WD40-rpts
Query 481 RTSSSDRLTDDIWEEGNNKVKDLEAVQMLQDIFLKADNRELQAEVLNRMFKIFSSHLENYKLCQQLRTVPLLILNMAGFP 560
WD40-rpts
Query 561 SSLQEIILKILEYAVTVVNCVPEQELLSLCCLLQQPIMSELKHTILSFFVKLLSFDHHYKKVLREVGVLEVLLDDLKQHK 640
WD40-rpts
Query 641 FLQSPDQAGGNFHQLERKSSTSSFKKHLDNKDTILSSPKLLESGGSGKFPIFEVQSTTTVAWDCIASLLKKAEASQTSFR 720
WD40-rpts
Query 721 SSNGVAIVLPFLVSNVHRQGVLRLLSCLIIEDTAQAHPEELSAIVEILKSGMVTSISGSQYGLHNEAKCETMGTLWRILG 800
WD40-rpts
Query 801 VNNSAQRVFGEVTGFSLLLTTLHSFQSGGDSYQCSIEDRVKVFKYLMRVVTAGVCDNALNRTKLHTVILSQTFNDLLSES 880
WD40-rpts
Query 881 GLICVEFERRVIQLLLELSLEMVLPPYLKFEDAPSPDSVENNSSSFHLITPSGSFHPNKERVYNAGAIRVLIRLLLLFTP 960
WD40-rpts
Query 961 KVQLEVLDIIEKLACAGPFNQENLTSVGCVELLLETIRPFLLGSSPLLAYTLKIVEVLGAYRLSASELQMLIRFALQMRL 1040
WD40-rpts
Query 1041 LKSGHILIDMMERLVHMEDMASESLSLAPFIEMDMSKIGHASIQVSLGERSWPPAAGYSFVCWFQFHNFLKSPGKEYEPS 1120
WD40-rpts
Query 1121 KVGPSKRWSAKNAQSQEQQILRIFSVGAASNDNTFYAELYLQEDGILTLATSNSSSLSFSGIDLEEGRWHHLAVVHSKPN 1200
WD40-rpts
Query 1201 ALAGLFQASIAYVYLNGKLKHTGKLGYAPSPIGKSLQVNIGTPVACAKVSDMHWKLRSCYLFEEVLTPGCICFMYILGRG 1280
WD40-rpts
Query 1281 YRGIFQDTDLLHFVPNQACGGGSMAILDSLDADLALTHNMQKHEGASKLGDTRGDGSGIVWDMERLGNLSLQLSGKKLIF 1360
WD40-rpts
Query 1361 AFDGTSAEAMRGSGVLSMLNLVDPMSAAASPIGGIPRFGRLHGDVYVCKQCVIGDTIRPVGGMTVILALVEASETREMLH 1440
WD40-rpts
Query 1441 MALTLLACALHQNPQNVRDMQTYRGYHLLALFLHRRMSLFDMQSLEIFFQIAACEASFAEPKKLESVQTNFSPINAFQET 1520
WD40-rpts
Query 1521 SYDELSLSKLRDEISSIGSHGDFDDFSAQKDSFSHISELENPEISGETSNCVVLSNPDMVEHVLLDWTLWVTAPVAIQIA 1600
WD40-rpts
Query 1601 LLGFLEHLVSMHWYRNHNLTVLRRINLVQHLLVTLQRGDVEVPVLEKLVVLLGVILEDGFLVSELELVVKFVIMTFDPPQ 1680
WD40-rpts
Query 1681 LTPRRPILRESMGKHVIVRNMLLEMLIDLQVTIKSEDLLEQWHKIVSSKLITYFLDEAVHPSSMRWIMTLLGVCLTSSPT 1760
WD40-rpts
Query 1761 FALKFRTSGGYQGLVRVLPSFYDSPDIYYILFCLIFGKPVYPRLPEVRMLDFHALMPSDGSFVELKFVELLEPVIAMAKS 1840
WD40-rpts
Query 1841 TFDRLSVQTMLAHQSGNLSQASAGLVAELAEGNADNAGELQGEALMHKTYAARLMGGEASAPAAATSVLRFMVDLAKMCH 1920
WD40-rpts
Query 1921 PFSAVCRRTDFLESCVGLYFSCVRAAYAVRMAKELSVKTEEKNSNDGDDANSSQNTFTSMPQEQDLSVKTSISVGSFPQG 2000
WD40-rpts
Query 2001 QASTSSDDTAAPQNESSHKDENNTIPSPQMSRKSEHDFQVAESLEGENIDQESVTSSTNEFSIRTRKDAPEPLQPIDSHS 2080
WD40-rpts
Query 2081 SASLNLIDSPILSEKSNYRVPLTPSSSPVVALTSWLGNSSNSEIKSSSAAPPSVESFASAAEFDPTTDLKSTSQGHPAAN 2160
WD40-rpts
Query 2161 TFFSVSPKQLLEMDDSGYGGGPCSAGATAVLDFMAEVLSDILTEQIKAAPVIESILENVPLYVDTESMLVFQGLCLTRLM 2240
WD40-rpts
Query 2241 NFLERRLLRDDEEDEKKLDKARWSANLDAFCWMIVDRVYMGAFPQPASVLKTLEFLLSMLQLSNKDGRIEVSPSGKGLLS 2320
WD40-rpts
Query 2321 IGRGSKQLDAYVHSILKNTSRMILYCFLPSFLISIGEDGLLSCLGLLMEPKKRSFTSTYHVDSGIDICTVLQLLVAHRRI 2400
WD40-rpts
Query 2401 IFCPSNVDTDLNCCLCVNLITLLRDSRQYVQNMAVDVVRYLLVHRRAALEDLLVSKPNQGQSMDVLHGGFDKLLTESLSD 2480
WD40-rpts
Query 2481 FFDWLQPSEQIVKKVLEQCAALMWVQYITGSAKFPGVRIKAMEGRRKKEMGRRSRDISKLDMRHWEQVNEQRYALDLLRD 2560
WD40-rpts
Query 2561 SMSTELRVLRQDKYGWVLHAESEWKSHLQQLVHERSIFPISISSVSEDPEWQLCPIEGPYRMRKKLERTKLKLDTIQNAL 2640
WD40-rpts
Query 2641 DGKFELKEAELIKGGNGLDTSDGDSESYFHLLNDNAKQNDSDSDLFEEPMFHESDDVRDEASVKNGWNDDRASSANDASL 2720
WD40-rpts
Query 2721 HSALEYGAKSSAVSIPLAESIQGRSDLGSPRQSSSAKIDEVKVSDDKYDKELHDDGEYLIRPYLEPFEKIRFRYNCERVI 2800
WD40-rpts
Query 2801 GLDKHDGIFLIGELCLYVIENFYINDSRCICEKECEDELSVIDQALGVKKDCMGSMDFQSKSTSSWGVAAKSWSGGRAWA 2880
WD40-rpts
Query 2881 YSGGAWGKEKVGSSGNLPHPWRMWKLDSVHEILKRDYQLRPVAVEIFSMDGCNDLLVFHKKEREEVFKNLVAMNLPRNSM 2960
WD40-rpts
Query 2961 LDTTISGSTKQESNEGSRLFKIMAKSFSKRWQNGEISNFQYLMHLNTLAGRGYSDLTQYPVFPWVLADYESENLDLTDPK 3040
WD40-rpts
Query 3041 TFRMLAKPMGCQTPEGEEEFKKRYESWDDPEVPKFHYGSHYSSAGIVLFYLLRLPPFSAENQKLQGGQFDHADRLFNSIR 3120
WD40-rpts
Query 3121 DTWLSAAGKGNTSDVKELIPEFFYMPEFLENKFNLDLGEKQSGEKVGDVFLPPWANGSAREFIRKHREALESDFVSENLH 3200
WD40-rpts
Query 3201 HWIDLIFGNKQRGKAAEEATNVFYHYTYEGSVDIDSVTDPAMKASILAQINHFGQTPKQLFLKPHVKRRVDKKFPHPLKH 3280
WD40-rpts
Query 3281 SNLLVPHEIRKSLSSVTQIITLNEKILVAGANTLLKPRSYTKYVAWGFPDRSLRFLSYDQDRLLSTHENLHEGNQIQCAG 3360
WD40-rpts (___________________WD
Query 3361 VSHDGCTLVTGADDGLVWVWRITKQAPRLVRRLQLEKALSAHTAKITCLYVSQPYMLIASGSDDCTVIIWDLSSLVFVRQ 3440
WD40-rpts 1___________________) (_________________WD 2________________)
Query 3441 LPKFPTAVSAIYVNDLTGEIVTAAGILLAVWSINGDCLAMVNTSQLPSDSILSITSGTFSDWMDTNWYATGHQSGAVKVW 3520
WD40-rpts (_________________WD 3________________
Query 3521 QMVHCSNPASQIKSTGSSVVGLNLDNKVSEYRLVLHKVLKFHKHPVTALHLTSDLKQLLSGDSNGHLVSWTLAGDNLKAA 3600
WD40-rpts ) (_____________________WD 4_____________________)
Query 3601 SMNLR 3605
WD40-rpts
 4 WD40-repeats found in QUERY=CsaV3_7G027700 (Len=3605): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 39 3338-3381 4.30 292.12 0.00718 25.0% 47.32 WD 2: Seg 42 3393-3431 6.36 377.42 0.00051 32.5% 55.70 WD 3: Seg 51 3483-3521 2.86 232.73 0.04453 20.0% 12.68 WD 4: Seg 56 3544-3591 5.09 324.81 0.00261 27.5% 51.20Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3338-3381 YDQDRLLST--------HENLHEGNQIQCAGVSHDGCTLVTGADDGLVWVWR WD 2 3393-3431 -LQ----LE--------KALSAHTAKITCLYVSQPYMLIASGSDDCTVIIWD WD 3 3483-3521 TSQ----LP--------SDSILSITSGTFSDWM-DTNWYATGHQSGAVKVWQ WD 4 3544-3591 LDN----KVSEYRLVLHKVLKFHKHPVTALHLTSDLKQLLSGDSNGHLVSWT WD40 Template TGE----CL--------RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |