Input parameters:

  Query = CsaV3_1G000890 (Len=357)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G000890, Len=357):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNHGFFSNMQEKMPMARETTPLRIATLTTPNTATCLAAHNGLLYSGATNQITVFDITNHFTQIDTLCVNDAASGSVKSIA 80  
WD40-rpts                     (_________________WD 1_________________)       (________________W

Query       81 FGPWKVFTAHQDCKIRVWKVTRSGPPCHRLLATLPTVKDRLYRFISPRNYVHVRRHRKRLWIEHWDAVSGVVVNGGFVYS 160 
WD40-rpts      D 2_______________)    (_________________WD 3________________)  (___________WD 4

Query      161 VSWDRSLKVWSASDHKCLLSVKAHEDAVNAVAVGQNGVVYTGSADGVIGVWEVREGKKKKKYTLVRTLNNHKSTVNAIVL 240 
WD40-rpts      __________)   (________________WD 5________________)(_____________________WD 6__

Query      241 NEGGRAMFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGDVTNGYRCTTVVDGH 320 
WD40-rpts      ___________________)       (________________WD 7_______________)      (_________

Query      321 RSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 357 
WD40-rpts      __________WD 8___________________)   

8 WD40-repeats found in QUERY=CsaV3_1G000890 (Len=357):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    16-55       6.07  365.47  0.00074       22.5%     46.24
  WD 2:  Seg  7    63-99       6.98  402.83  0.00023       22.5%     52.00
  WD 3:  Seg 11   104-142      6.99  403.35  0.00023       12.5%     32.38
  WD 4:  Seg 15   145-171      3.52  260.22  0.01922       22.5%     42.94
  WD 5:  Seg 18   175-212      8.54  467.31  3.1e-05       32.5%     53.94
  WD 6:  Seg 22   213-260      9.39  502.36  1.1e-05       37.5%     52.32
  WD 7:  Seg 26   268-304      7.18  411.08  0.00018       35.0%     50.29
  WD 8:  Seg 30   311-354      7.60  428.43  0.00010       32.5%     53.34

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-55     ARE--------TTPLRIATLTTPNTATCLAA-----HNGLLYSGATN-QITVFD
   WD 2   63-99     -ID--------TLC-VNDAASGSVKSIAFGP-----WK--VFTAHQDCKIRVWK
   WD 3  104-142    -GP--------PCH-RLLATLPTVKDRLYRF-----ISPRNYVHVRRHRKRLWI
   WD 4  145-171    --------------------WDAVSGVVV-------NGGFVYSVSWDRSLKVWS
   WD 5  175-212    -HK--------CLL-SVKAHEDAVNAVAVGQ-----NG-VVYTGSADGVIGVWE
   WD 6  213-260    VREGKKKKKYTLVR-TLNNHKSTVNAIVLNE-----GGRAMFSGSSDRSIMVWK
   WD 7  268-304    -IS--------FVE-DLWGHQGAVLCLYTFR-----D--LLVSGSEDRTLRIWR
   WD 8  311-354    -YR--------CTT-VVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWS

   WD40 Template    TGE--------CLR-TLSGHTSGVTSVSFSP-----DGKRLVSGSEDGTIKVWD