Input parameters:

  Query = CmaCh16G003250 (Len=341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh16G003250, Len=341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTAIPPPPAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDASANVLRGEFVHGGPVLDCCFHDDSSGFSVSVDN 80  
WD40-rpts      (____________________WD 1____________________)  (________________WD 2___________

Query       81 TVRRLVFNHNKEDILGKHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQEHTLVGTYPQPERVYSLSLVGNRLVV 160 
WD40-rpts      _____)  (_________________WD 3________________)     (_________________WD 4______

Query      161 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDPSEASQAKKYAFKCHRKSEAGRD 240 
WD40-rpts      __________)(___________________WD 5___________________)                (________

Query      241 IVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIY 320 
WD40-rpts      _________WD 6________________)   (_________________WD 7________________)        

Query      321 VRSVNEIEVKPKPKVYPNPPT 341 
WD40-rpts                           

7 WD40-repeats found in QUERY=CmaCh16G003250 (Len=341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-46       8.05  447.27  5.8e-05       20.0%     49.87
  WD 2:  Seg  4    49-86       6.10  366.81  0.00071       25.0%     55.65
  WD 3:  Seg  8    89-127      9.08  489.54  1.6e-05       32.5%     52.80
  WD 4:  Seg 12   133-171      8.16  451.88  5.1e-05       22.5%     57.73
  WD 5:  Seg 16   172-215      7.14  409.56  0.00019       17.5%     54.87
  WD 6:  Seg 20   232-270      7.57  427.25  0.00011       22.5%     41.33
  WD 7:  Seg 24   274-312      8.33  458.55  4.1e-05       22.5%     47.30

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-46     MTAIPPPPAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYD
   WD 2   49-86     -ANV------LRGEFVHGGPVLDCCFHDDSSGF-SVSVDNTVRRLV
   WD 3   89-127    -HNK------EDILGKHDAPVRCVEYSYAAGQLITGSWDKTLKCWD
   WD 4  133-171    -GQE------HTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD
   WD 5  172-215    LRNM--SQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF
   WD 6  232-270    -HRK------SEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWD
   WD 7  274-312    -KKR------LYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDK

   WD40 Template    TGEC------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD