Input parameters:

  Query = CsaV3_3G042780 (Len=506)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G042780, Len=506):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQTSKSPSFFQDLSSRELNGFRVRKRPRFSSDIALSFKEVGAMSVEHDGDQTPPLAVSFCKTLNNSHIFALSDEDGYVSL 80  
WD40-rpts                                             (___________________WD 1_________________

Query       81 FNTRSRFSLFSSHEENTEKSRISEWEAHRNAVFDVCWIKDDTQMITASGDQSMKLWDVQEMECIGILRGHKGSVKSISSH 160 
WD40-rpts      _)                (_________________WD 2________________)   (_________________WD

Query      161 PTNHDLIVSGSRDGSFALWDLRTPSCSKVGSEELYLRATAVVKGAHLSPYAKRIRRQKSASKSITSVLYLKDELSVATAG 240 
WD40-rpts       3_________________)                              (_________________WD 4________

Query      241 AVDSIVKFWDTRNLKNAITMCQPKSSEKDTRLHGISSLSQDANGAFLSASCMDNRIYLYNVLQLEKGPVKSFSGCQIDSF 320 
WD40-rpts      _________)          (_________________WD 5_________________)     (______________

Query      321 FVKSAISPDASYLLSGSTDGNAHVWQVDKPHEDPITLTKHNGEVSAVDWSSFEVGKFVTSSDDFTVRIWNSQNNSCSSSK 400 
WD40-rpts      ____WD 6_________________)    (_________________WD 7_________________)          

Query      401 RPTSCNRKRIMAMPSIEHAKDSDSSDSPFFDRARAAPSNSKSYMDMEHKLSTPESKVKRSISDATADLIESFEKTPEANS 480 
WD40-rpts                                      (________________WD 8________________)          

Query      481 KSPSSVLHPPSSLKRKTIRDYFLVAP 506 
WD40-rpts                                

8 WD40-repeats found in QUERY=CsaV3_3G042780 (Len=506):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    40-82       8.82  479.08  2.2e-05       20.0%     54.19
  WD 2:  Seg  7    99-137      8.77  477.11  2.3e-05       22.5%     50.76
  WD 3:  Seg 11   141-180      9.27  497.73  1.2e-05       42.5%     56.06
  WD 4:  Seg 17   211-250      8.26  455.92  4.5e-05       25.0%     54.28
  WD 5:  Seg 22   261-300      9.23  495.80  1.3e-05       17.5%     40.97
  WD 6:  Seg 25   306-346      7.85  438.98  7.5e-05       35.0%     52.51
  WD 7:  Seg 29   351-390      8.19  452.93  4.9e-05       30.0%     53.97
  WD 8:  Seg 37   433-470      4.74  310.39  0.00408        7.5%     28.88

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   40-82     VGAMSVEHDGDQ--TPPLAVSFCKTLN-NS-HIFA-LSDEDGYVSLFN
   WD 2   99-137    -KSRISEWEAHR--NAVFDVCWI---K-DD-TQMI-TASGDQSMKLWD
   WD 3  141-180    -MECIGILRGHK--GSVKSISSH---P-TNHDLIV-SGSRDGSFALWD
   WD 4  211-250    -AKRIRRQKSAS--KSITSVLYL---K-DE-LSVATAGAVDSIVKFWD
   WD 5  261-300    CQPKSSEKDTRL--HGISSLSQD---A-NG-AFLS-ASCMDNRIYLYN
   WD 6  306-346    -KGPVKSFSGCQIDSFFVKSAIS---P-DA-SYLL-SGSTDGNAHVWQ
   WD 7  351-390    -HEDPITLTKHN--GEVSAVDWS---SFEV-GKFV-TSSDDFTVRIWN
   WD 8  433-470    --ARAAPSNSKS--YMDMEHKLS---T-PE-SKVK-RSISDATADLIE

   WD40 Template    TGECLRTLSGHT--SGVTSVSFS---P-DG-KRLV-SGSEDGTIKVWD