Input parameters:

  Query = CsaV3_3G042740 (Len=337)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G042740, Len=337):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALTELDDATVRSMSIGAVFSDFVGKINSLDFHRKEDLLVTASEDDSVRLYDIANARLLKTTFHKKHGADRICFTHHPSS 80  
WD40-rpts            (____________________WD 1____________________)   (____________________WD 2

Query       81 VICSSRHNLDTNGESLRYLSMYDNRCLRYFKGHKDRVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 160 
WD40-rpts      ___________________)   (_________________WD 3________________)(_________________

Query      161 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDMAEVFDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKQCGFSL 240 
WD40-rpts      WD 4_________________)       (_________________WD 5________________)     (______

Query      241 EPSPNTTIEATFTPDGQYVVSGSGDGTLHAWNINKRAEVASWNSHIGVASCLKWAPRRVMFVAASSVLTFWIPNATKSTG 320 
WD40-rpts      ___________WD 6________________)   (_________________WD 7________________)      

Query      321 ESGMEFDSHTQAEHISQ 337 
WD40-rpts                       

7 WD40-repeats found in QUERY=CsaV3_3G042740 (Len=337):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     7-52       8.67  472.85  2.6e-05       25.0%     52.84
  WD 2:  Seg  6    56-100      7.04  405.51  0.00021       12.5%     55.16
  WD 3:  Seg 10   104-142     10.35  542.10  3.1e-06       37.5%     57.97
  WD 4:  Seg 14   143-182      7.54  426.17  0.00011       20.0%     51.64
  WD 5:  Seg 18   190-228      8.42  462.33  3.7e-05       25.0%     54.85
  WD 6:  Seg 22   234-272      9.53  508.48  8.7e-06       35.0%     57.04
  WD 7:  Seg 26   276-314      8.33  458.91  4.1e-05       12.5%     49.62

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-52     DDATVRSMSIGAVFSDFVGKINSLDFHRKEDLLVTASE------DDSVRLYD
   WD 2   56-100    -ARLLK------TTFHKKHGADRICFTHHPSSVICSSRHNLDTNGESLRYLS
   WD 3  104-142    -NRCLR------YFKGHKDRVVSLCMSPINDSFMSGSL------DHSVRIWD
   WD 4  143-182    LRVNAC------QGILRLRGRPTVAYDQQGLVFAVAME------GGAIKLFD
   WD 5  190-228    -PFDTF------LVGGDMAEVFDIKFSNDGKSMLLTTT------NNNIYVLD
   WD 6  234-272    -KQCGF------SLEPSPNTTIEATFTPDGQYVVSGSG------DGTLHAWN
   WD 7  276-314    -RAEVA------SWNSHIGVASCLKWAPRRVMFVAASS------VLTFWIPN

   WD40 Template    TGECLR------TLSGHTSGVTSVSFSPDGKRLVSGSE------DGTIKVWD