Input parameters:

  Query = CmaCh02G010030 (Len=453)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh02G010030, Len=453):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAASLSSSNAGRSRCPLQEQHLQKKHSRENLDRFIPNRSAMDFDYAHYMVTDGRKGKENSSICSPSREAYQKRLAETLN 80  
WD40-rpts                                                                                      

Query       81 MNRTRILAFRNKPPAPVELIPKEFFSSGSNDKPVKARRHIPQTSERTLDAPDLVDDYYLNLLDWGSANVLAIALGNTVYL 160 
WD40-rpts      (________________WD 1________________)   (__________________WD 2________________

Query      161 WNANDGSTSELVTVDDEVGPITSVNWAPDGRHIAIGFHNSEVQLWDSTANRQLRTLRGGHRMRVGSLAWNNHILTTGGMD 240 
WD40-rpts      _)(___________________WD 3___________________)   (________________WD 4__________

Query      241 GKIINNDVRIRDHIVGTYRGHDQEVCGLKWSLSGQQLASGGNDNVLHIWDRSMASSNSATQWLHRLEDHTSAVKALAWCP 320 
WD40-rpts      ______)    (_________________WD 5________________)             (________________

Query      321 FQSNLLATGGGASDRTIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFSQNQLTLWKYPSMVKMGELTGHTSR 400 
WD40-rpts      WD 6________________)   (_________________WD 7_________________)   (____________

Query      401 VLFMAQSPDGCTVASAAADETLRFWNVFGAPEVAKPAAKSYNAEPFAHINRIR 453 
WD40-rpts      _____WD 8________________)                           

8 WD40-repeats found in QUERY=CmaCh02G010030 (Len=453):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    81-118      5.63  347.08  0.00131       22.5%     39.06
  WD 2:  Seg  6   122-162      5.37  336.39  0.00182       12.5%     53.91
  WD 3:  Seg 10   163-206      8.83  479.40  2.2e-05       27.5%     58.09
  WD 4:  Seg 14   210-247      5.61  346.24  0.00134       35.0%     52.12
  WD 5:  Seg 18   252-290      9.42  503.86  1.0e-05       30.0%     56.81
  WD 6:  Seg 22   304-341      6.77  394.25  0.00030       32.5%     38.62
  WD 7:  Seg 25   345-384      5.07  324.22  0.00266       17.5%     50.69
  WD 8:  Seg 29   388-426      9.53  508.51  8.7e-06       35.0%     57.35

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   81-118    -MN----RTRIL-AFRN--KPPAPVELIPK-EFFS---S-GSNDKPVKARR
   WD 2  122-162    -QT----SERTL-DAPDLVDDYYLNLLDWGSANVL---A-IALGNTVYLWN
   WD 3  163-206    ANDGSTSELVTV-DDEV--GPITSVNWAPDGRHIA---I-GFHNSEVQLWD
   WD 4  210-247    -NR----QLRTLRGGHR--MRVGSLAW--NNHILT---T-GGMDGKIINND
   WD 5  252-290    -DH----IVGTY-RGHD--QEVCGLKWSLSGQQLA---S-GGNDNVLHIWD
   WD 6  304-341    ---------HRL-EDHT--SAVKALAWCPFQSNLLATGG-GASDRTIKFWN
   WD 7  345-384    -GA----CLNSV-DTGS--QVCALLWNKNERELLS---SHGFSQNQLTLWK
   WD 8  388-426    -MV----KMGEL-TGHT--SRVLFMAQSPDGCTVA---S-AAADETLRFWN

   WD40 Template    TGE----CLRTL-SGHT--SGVTSVSFSPDGKRLV---S-GSEDGTIKVWD