Input parameters:

  Query = CmaCh10G007430 (Len=320)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh10G007430, Len=320):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLAGLKSVENAHEESVWAATWIPATDNRPSLLVTGSLDETVKLWKSDELDLDRTNTGHCLGVVSVAAHPSGYIAASASL 80  
WD40-rpts        (___________________WD 1___________________)   (_________________WD 2_________

Query       81 DSFVRIFEVDSNSTIATLEAPPSEVWQMRFNPEGTMLAVAGGGSASIKIWDTSTWKLAATLSIPRPEGPKPTDKTASKKF 160 
WD40-rpts      _______)   (_________________WD 3_________________)                (____________

Query      161 VLSVAWSVDGRRLACGSMDGTISVFDVARAKFLHHLEGHFMPVRSLVYSPVEPRLLFSASDDAHVHMYDAEGKTLIGAMS 240 
WD40-rpts      _____WD 4________________)   (_________________WD 5_________________)   (_______

Query      241 GHSSWVLSVDASPDGAAVATGSSDRTVRLWDLNMRTAVQTMTNHSDQVWGVAFRPPGAGVRSGRLASVSDDKSISLYDYS 320 
WD40-rpts      __________WD 6________________)   (___________________WD 7___________________)  

7 WD40-repeats found in QUERY=CmaCh10G007430 (Len=320):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-46       8.44  463.32  3.5e-05       27.5%     54.70
  WD 2:  Seg  5    50-88       9.75  517.40  6.6e-06       32.5%     56.35
  WD 3:  Seg  9    92-131      8.81  478.39  2.2e-05       35.0%     56.60
  WD 4:  Seg 14   148-186      9.38  502.13  1.1e-05       42.5%     40.36
  WD 5:  Seg 17   190-229      8.68  473.34  2.6e-05       32.5%     55.56
  WD 6:  Seg 21   233-271     10.61  553.14  2.2e-06       42.5%     57.34
  WD 7:  Seg 25   275-318      8.60  470.02  2.9e-05       35.0%     54.72

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-46     LAGLKSVENAHEESVWAATWIP-ATDNRPS-----LL-VTGSLDETVKLWK
   WD 2   50-88     -LDLDRTNTGHCLGVVSVAAHP-S----GY-----IA-ASASLDSFVRIFE
   WD 3   92-131    -NSTIATLEAPPSEVWQMRFNP-E----GT-----MLAVAGGGSASIKIWD
   WD 4  148-186    -GPKPTDKTASKKFVLSVAWSV-D----GR-----RL-ACGSMDGTISVFD
   WD 5  190-229    -AKFLHHLEGHFMPVRSLVYSPVE----PR-----LL-FSASDDAHVHMYD
   WD 6  233-271    -KTLIGAMSGHSSWVLSVDASP-D----GA-----AV-ATGSSDRTVRLWD
   WD 7  275-318    -RTAVQTMTNHSDQVWGVAFRP-P----GAGVRSGRL-ASVSDDKSISLYD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-D----GK-----RL-VSGSEDGTIKVWD