WDRR: WD40 Repeat Recognition
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JobID: 10FLE1349453027    Submitted: 2012-10-06 00:03:47

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Job status:  [Done] Total run time: 389798276 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = tr_D8PFU2_D8PFU2_9BACT (Len=742)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (tr_D8PFU2_D8PFU2_9BACT, Len=742):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MITERFQLMLKPVHLRTWFDRLARAVITVGGLATIISILGIFFFLFREVTPLFTAPSAKLTQRLSVPALLVDEGPAQVAV 80  
WD40-rpts                                                                                      

Query       81 DEHREIAQVFTSGAIQFFDLASGQPIPLETPAQVKARQITAMASGGGNAPRLAVGTADGEVLFLKVGTTTEFTDQGERRK 160 
WD40-rpts                                                                                      

Query      161 RPHIRAGQPIPLTKSPIVRLAYRANDQGSLLALLSKGGRLLVARIAADDVAGHHPIITELPQPRGEVTALALDALLENLY 240 
WD40-rpts                                                                                      

Query      241 VGTADGQVVHVGLSETEPPEMRAAYTVAASSTAVTTLGFLSGDRSLVVMSGDGAVSTWGLVRRADAPSGWTLTQIHTLRA 320 
WD40-rpts                                                                                      

Query      321 HNAPVTAFAPSQRVKGFVTGDRKGNLFLHHATSSQTLLRLANSEFPIRAVAFAPKGDGLIALDGAGQLSLYQVQNAYPEV 400 
WD40-rpts                                                                                      

Query      401 TLETLFGKVWYEGYDQPAHVWQSSSGSDDVEPKLGLLPLAFGTLKGTMYALFLAVPIAILAAMCTSQFMHQDLRAKIKPI 480 
WD40-rpts                                                                                      

Query      481 IEVMAALPTVVLGFLAGLWLAPLLERMLPAVAGMALVLPLLVVLASFGWYLCPLSVKRHLPQGQEALLLIPLLGLGIAGC 560 
WD40-rpts                                                                                      

Query      561 LWANSFIEGWWFDGNVKAWLSSRLGIQYDQRNALIVGIVMGFAIVPVIYSIAEEALSNVPKIQIAGSLALGATRWQTVLH 640 
WD40-rpts                                                                                      

Query      641 LVLLSASPGIFSAVMIGFGRAIGDTMIVLMATGNTPILDWNWANGFRTLSANIAVEIPEAPHGGSLYRVLFLAALLLFIV 720 
WD40-rpts                                                                                      

Query      721 TFVINSLAELIRQRLRDKYSHG 742 
WD40-rpts                            



No WD40-repeats found in QUERY=tr_D8PFU2_D8PFU2_9BACT (Len=742)!

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