Input parameters:

  Query = CsaV3_4G028680 (Len=452)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G028680, Len=452):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENFGNDFLDYLVDDDYYDVANFDDDSSFGDDETQRSSDVDSLDSDFEDDFEMSKSRTDTSALEARNGKDIQGIPWERLH 80  
WD40-rpts                                                                                      

Query       81 FTREKCRETRLKQYKNYENLSRPRQDLEKECLQVEMGHAFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVL 160 
WD40-rpts                                                                                      

Query      161 HWSSLLRRSKEVLNVAKPVVPTLKLPGLMSQSLSRVQISTMAVKENLVVAGGFQGELICKYLNHPEVAFCTKITANENAI 240 
WD40-rpts                                 (______________WD 1______________)            (______

Query      241 TNAVDIYRDSVSGIRIMTANNDCKIRIYDAECFSSLGCFSFDWSVNNTSVSPDGKMLAVLGDSPDCLITDANSGRAIGCL 320 
WD40-rpts      _________WD 2_______________)(__________________WD 3_________________)   (______

Query      321 QGHLDYSFSSAWHPNGHILATGNQDTTCRLWDVRKMSESMGVLKGRMGAIRALKFTSDGRFLAMAEPADFVHIFDTQSGY 400 
WD40-rpts      ___________WD 4________________)    (_________________WD 5________________)   (_

Query      401 VEGQEIDMFGEIAGISFSPDAESLFVGVSDRTYGSLLEFNRRRENRYLDSII 452 
WD40-rpts      ________________WD 6_________________)              

6 WD40-repeats found in QUERY=CsaV3_4G028680 (Len=452):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   188-221      6.05  364.70  0.00076       15.0%     48.09
  WD 2:  Seg 10   234-269      7.57  427.34  0.00011       22.5%     38.24
  WD 3:  Seg 13   270-310      7.30  416.41  0.00015       22.5%     57.13
  WD 4:  Seg 17   314-352     10.14  533.67  4.0e-06       32.5%     53.52
  WD 5:  Seg 21   357-395      8.89  482.04  2.0e-05       20.0%     56.44
  WD 6:  Seg 25   399-438      7.42  421.21  0.00013       25.0%     57.18

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  188-221    -------LMSQSLSRVQISTMAVKENLVVAGGFQGEL-ICKY
   WD 2  234-269    T-----ANENAITNAVDIYRDSVSGIRIMTANNDCKI-RIYD
   WD 3  270-310    AECFSSLGCFSFDWSVNNTSVSPDGKMLAVLGDSPDC-LITD
   WD 4  314-352    -GR-AIGCLQGHLDYSFSSAWHPNGHILATGNQDTTC-RLWD
   WD 5  357-395    -SE-SMGVLKGRMGAIRALKFTSDGRFLAMAEPADFV-HIFD
   WD 6  399-438    -GY-VEGQEIDMFGEIAGISFSPDAESLFVGVSDRTYGSLLE

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTI-KVWD