Input parameters:

  Query = gi_197927448_ref_NP_060501.3_WDR6 (Len=1151)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_197927448_ref_NP_060501.3_WDR6, Len=1151):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSAARWEGSFSREFSSLLSRGCLSTSRIDMDALEDYVWPRATSELILLPVTGLECVGDRLLAGEGPDVLVYSLDFGGHL 80  
WD40-rpts      (_____________WD 1____________)                                                 

Query       81 RMIKRVQNLLGHYLIHGFRVRPEPNGDLDLEAMVAVFGSKGLRVVKISWGQGHFWELWRSGLWNMSDWIWDARWLEGNIA 160 
WD40-rpts              (_________________WD 2_________________)(___________________WD 3________

Query      161 LALGHNSVVLYDPVVGCILQEVPCTDRCTLSSACLIGDAWKELTIVAGAVSNQLLVWYPATALADNKPVAPDRRISGHVG 240 
WD40-rpts      ___________)   (___________________WD 4__________________)          (___________

Query      241 IIFSMSYLESKGLLATASEDRSVRIWKVGDLRVPGGRVQNIGHCFGHSARVWQVKLLENYLISAGEDCVCLVWSHEGEIL 320 
WD40-rpts      ______WD 5________________)(_____________________WD 6____________________)  (___

Query      321 QAFRGHQGRGIRAIAAHERQAWVITGGDDSGIRLWHLVGRGYRGLGVSALCFKSRSRPGTLKAVTLAGSWRLLAVTDTGA 400 
WD40-rpts      ______________WD 7_________________)           (________________WD 8____________

Query      401 LYLYDVEVKCWEQLLEDKHFQSYCLLEAAPGPEGFGLCAMANGEGRVKVVPINTPTAAVDQTLFPGKVHSLSWALRGYEE 480 
WD40-rpts      ____)      (_________________WD 9_________________)   (__________________WD10___

Query      481 LLLLASGPGGVVACLEISAAPSGKAIFVKERCRYLLPPSKQRWHTCSAFLPPGDFLVCGDRRGSVLLFPSRPGLLKDPGV 560 
WD40-rpts      _______________)  (_______________________WD11______________________)(__________

Query      561 GGKARAGAGAPVVGSGSSGGGNAFTGLGPVSTLPSLHGKQGVTSVTCHGGYVYTTGRDGAYYQLFVRDGQLQPVLRQKSC 640 
WD40-rpts      _______WD12_________________)(_______________WD13_______________)   (___________

Query      641 RGMNWLAGLRIVPDGSMVILGFHANEFVVWNPRSHEKLHIVNCGGGHRSWAFSDTEAAMAFAYLKDGDVMLYRALGGCTR 720 
WD40-rpts      ________WD14__________________)                                     (___________

Query      721 PHVILREGLHGREITCVKRVGTITLGPEYGVPSFMQPDDLEPGSEGPDLTDIVITCSEDTTVCVLALPTTTGSAHALTAV 800 
WD40-rpts      ______WD15________________)(_________________WD16________________)       (______

Query      801 CNHISSVRAVAVWGIGTPGGPQDPQPGLTAHVVSAGGRAEMHCFSIMVTPDPSTPSRLACHVMHLSSHRLDEYWDRQRNR 880 
WD40-rpts      ___________WD17________________)                                                

Query      881 HRMVKVDPETRYMSLAVCELDQPGLGPLVAAACSDGAVRLFLLQDSGRILQLLAETFHHKRCVLKVHSFTHEAPNQRRRL 960 
WD40-rpts            (_______________WD18_______________)  (_______________________WD19________

Query      961 LLCSAATDGSLAFWDLTTMLDHDSTVLEPPVDPGLPYRLGTPSLTLQAHSCGINSLHTLPTREGHHLVASGSEDGSLHVF 1040
WD40-rpts      ______________)                        (__________________WD20__________________

Query     1041 VLAVEMLQLEEAVGEAGLVPQLRVLEEYSVPCAHAAHVTGLKILSPSIMVSASIDQRLTFWRLGHGEPTFMNSTVFHVPD 1120
WD40-rpts      )                         (_______________WD21_______________)          (_______

Query     1121 VADMDCWPVSPEFGHRCALGGQGLEVYNWYD 1151
WD40-rpts      __________WD22________________)

22 WD40-repeats found in QUERY=gi_197927448_ref_NP_060501.3_WDR6 (Len=1151):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-31       4.22  288.94  0.00792       17.5%     16.15
  WD 2:  Seg  8    89-128      3.88  275.07  0.01216        7.5%     12.48
  WD 3:  Seg 11   129-172      4.32  293.22  0.00694        7.5%     47.82
  WD 4:  Seg 15   176-218      5.68  349.48  0.00121       17.5%     47.46
  WD 5:  Seg 19   229-267      8.54  467.30  3.1e-05       27.5%     52.59
  WD 6:  Seg 23   268-314      6.14  368.39  0.00067       27.5%     55.86
  WD 7:  Seg 27   317-356      7.85  438.81  7.6e-05       25.0%     58.25
  WD 8:  Seg 31   368-405      4.77  311.74  0.00391       12.5%     54.00
  WD 9:  Seg 35   412-451      5.58  344.99  0.00139       17.5%     46.01
  WD10:  Seg 39   455-496      5.33  334.68  0.00192       15.0%     48.91
  WD11:  Seg 43   499-549      7.04  405.31  0.00021       20.0%     49.42
  WD12:  Seg 47   550-589      7.06  406.37  0.00021       12.5%     15.61
  WD13:  Seg 50   590-625      5.50  341.73  0.00154       15.0%     38.69
  WD14:  Seg 53   629-671      6.51  383.55  0.00042       20.0%     55.58
  WD15:  Seg 60   709-747      5.88  357.44  0.00095       20.0%     42.04
  WD16:  Seg 64   748-786      6.59  386.77  0.00038       12.5%     27.48
  WD17:  Seg 66   794-832      6.49  382.85  0.00043       15.0%     31.72
  WD18:  Seg 72   887-922      6.03  363.89  0.00078       12.5%     35.65
  WD19:  Seg 75   925-975      6.85  397.55  0.00027       22.5%     36.79
  WD20:  Seg 78  1000-1041     5.18  328.58  0.00232       35.0%     47.03
  WD21:  Seg 84  1067-1102     5.74  351.90  0.00113       20.0%     48.17
  WD22:  Seg 88  1113-1151     2.92  235.44  0.04102       10.0%     16.09

Multiple sequence alignment of 22 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-31     MG-----------------------------------S-----------A-ARWE----GSFSREFS---SL-LSRGCLSTSRIDM
   WD 2   89-128    LL---------G------HYLIH-----------GFRV-----------R-PEPN----GDLDLEAM---VA-VFGSKGLRVVKIS
   WD 3  129-172    WG---------QGHFWELWRSGL-----------WNMS-----------D-WIWD----ARWLEGN-----I-ALALGHNSVVLYD
   WD 4  176-218    -G---------C------ILQEV-----------PCTD-----------R-CTLSSACLIGDAWKEL---TI-VAGAVSNQLLVWY
   WD 5  229-267    -V---------A------PDRRI-----------SGHV-----------G-IIFS----MSYLESKG---LL-ATASEDRSVRIWK
   WD 6  268-314    VGDLRVPGGRVQ------NIGHC-----------FGHS-----------A-RVWQ----VKLLEN-----YL-ISAGEDCVCLVWS
   WD 7  317-356    -G---------E------ILQAF-----------RGHQ-----------GRGIRA----IAAHERQA---WV-ITGGDDSGIRLWH
   WD 8  368-405    -S---------A------LCFKS-----------RSRP-----------G-TLKA----VTLAGSW----RL-LAVTDTGALYLYD
   WD 9  412-451    -E---------Q------LLEDK-----------HFQS-----------Y-CLLE----AAPGPEGF---GLCAMANGEGRVKVVP
   WD10  455-496    -P---------T------AAVDQ-----------TLFP-----------G-KVHS----LSWALRGYEELLL-LASGPGGVVACLE
   WD11  499-549    AA---------P------SGKAIFVKERCRYLLPPSKQ-----------R-WHTC----SAFLPPGD---FL-VCGDRRGSVLLFP
   WD12  550-589    SR---------P------GLLKD-----------PGVG-----------G-KARA----GAGAPVVG---SG-SSGGGNAFTGLGP
   WD13  590-625    -------------------VSTL-----------PSLH-----------G-KQGV----TSVTCHGG---YV-YTTGRDGAYYQLF
   WD14  629-671    -G---------Q------LQPVL-----------RQKS-------CRGMN-WLAG----LRIVPDGS---MV-ILGFHANEFVVWN
   WD15  709-747    -V---------M------LYRAL-----------GGCT-----------R-PHVI----LREGLHGR---EI-TCVKRVGTITLGP
   WD16  748-786    -E---------Y------GVPSF-----------MQPD-----------D-LEPG----SEGPDLTD---IV-ITCSEDTTVCVLA
   WD17  794-832    -A---------H------ALTAV-----------CNHI-----------S-SVRA----VAVWGIGT---PG-GPQDPQPGLTAHV
   WD18  887-922    DP---------E----------T-----------RYMS-----------L-AVCE----LDQPGLGP---LV-AAACSDGAVRLFL
   WD19  925-975    DS---------G------RILQL-----------LAETFHHKRCVLKVHS-FTHE----APNQRRRL---LL-CSAATDGSLAFWD
   WD20 1000-1041   -G---------T------PSLTL-----------QAHS-----------C-GINS----LHTLPTREGHHLV-ASGSEDGSLHVFV
   WD21 1067-1102   ------------------EYSVP-----------CAHA-----------A-HVTG----LKIL-SPS---IM-VSASIDQRLTFWR
   WD22 1113-1151   ST----------------VFHVP-----------DVAD-----------M-DCWP----VSPEFGHR---CA-LGGQGLEVYNWYD

   WD40 Template    TG---------E------CLRTL-----------SGHT-----------S-GVTS----VSFSPDGK---RL-VSGSEDGTIKVWD