Input parameters:

  Query = CmaCh11G006540 (Len=1601)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G006540, Len=1601):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWHPLSADGGIPSQYLRQPRTPINMKRNHANERFRVNRMGNKIARTTQVSASEYYLHDLPSSYNLVLKEVLGRGRFFKSI 80  
WD40-rpts                                                                                      

Query       81 LCKHDEGLVLVKVYFKRGDFIDLKEYERRLSQIKEIFRALPHPHVWPFQFWQETDKAAYLLRQYFFNNLHDRLSTRPFLN 160 
WD40-rpts                                                                                      

Query      161 LIEKKWLAFQLLLAVKQSHEKGICHGDIKCENVLVTSWNWLYLADFASFKPTYIPYDDPSDFSFFFDTGGRRLCYLAPER 240 
WD40-rpts                                                                                      

Query      241 FYEHGGELQDAHDAPLRPSMDIFAVGCVIAELFLEGQPLFELSQLLAYRRGQYDPSQLLEKIPDSGIRKMILHMIQLEPE 320 
WD40-rpts                                                                                      

Query      321 LRLSAENYLQDYANVVFPNYFLPFLHNFYCCWNPLHSDTRVALCQKVFPKILEQMTSCRSSGLTGTEKGSPKITMSGLPQ 400 
WD40-rpts                                                                                      

Query      401 YMNTKQNEHPTKRESIEKGLPREQFELLGDVDTLFKEVKQNNYHSSPEQLLEEVATKNITNCGDQSPGELFQSISNAFRR 480 
WD40-rpts                                                                                      

Query      481 NDHPFLKKITMNNLSSLMSSYDSQSDTFGLPFLPLPEESMRCEGMVLIASLLCSCIRNVKLPHLRRAAILLLRSSALYID 560 
WD40-rpts                                                                                      

Query      561 DEDRLQRVLPYVIAMLSDSAAIVRCAALETLCDILPLVRDFPPSDAKIFPEYILPMLSMIPDDPEESVRICYASNIAKLA 640 
WD40-rpts                                                                                      

Query      641 LTAYGFLIHSISLREAGVLDKLSIPQKPSALSSETPGQLGKLHGDAQLAQLRKSIAEVIQELVMGPKQTPSIRRALLKDI 720 
WD40-rpts                                                                                      

Query      721 GNLCCFFGQRQSNDFLLPILPAFLNDQDEQLRAVFYGQIVYVCFFVGERSVEEYLLPYIEQSLNDTAEPVIVNGLDCLAI 800 
WD40-rpts                                                                                      

Query      801 LCKRGFLRKRILLEMIEHAFPLLCYPSQWVRRSAATFIAASSERLGAVDSYVFLAPVIRPFLRRQPTSLASEKALLCCLK 880 
WD40-rpts                                                                                      

Query      881 PPISREIYYEVLENARSSDMLERQRKIWYNSSPQSVNWESIDLLKKGMGELNLMKNWPIKPQSSDGKSPADGLFLPPELP 960 
WD40-rpts                                                                                      

Query      961 DGDDCEEKFRGIKTPASNVSSKAEVSDPVFSEKLQLSGFISPQVSGINSFMLDKTSEGIPLYSFSLDKRETGFHSVASDS 1040
WD40-rpts                                                                                      

Query     1041 PLELNSLEFDSSSIPWMEPVNKSFNMASSAPAPKLVSGSLCVGSGSKQFYRVVHEPDGRENDQTSYISSKFQEIGPSSAL 1120
WD40-rpts                                                                                      

Query     1121 KGNSSVVEDVPSTNDSTSSPSFTRASSVPDSGWRPRGVLVAHLQEHRSAVNDIAVSTDHNFFVTASEDSTVKVWDSRKLE 1200
WD40-rpts                                          (_________________WD 1________________)     

Query     1201 KDISFRSRLTYHLEGSRALCASMLRGSAQVVVGSCDGLIHMFSVDYYSKGFGNVAEKYSGIADIKKKDIKEGAILSMMNY 1280
WD40-rpts                                                                                      

Query     1281 STDTSQMVMYSTQNCGIHLWDTRTNVNVFTLKSTPEEGYVSSLLAGPCGNWFVSGSSRGVLTLWDLRFLVPVSSWKYSVL 1360
WD40-rpts                           (___________________WD 2___________________)               

Query     1361 CPIERMCLFVHPPNTSVATAARPLIYVSAGCNEVSLWNAENWSCHQILRVASYDNETEMSDLPWALARPSSKGNPVQDLR 1440
WD40-rpts                                                                                      

Query     1441 RNVNPKYKVDELNEPPPRLHGIRSLLPLPGGDLLTGGTDLRIRRWDHYSPNRTYCVCGPNVKGIGSDDFYETRSSFGVQV 1520
WD40-rpts                                                                                      

Query     1521 VQETRRRPLSTNLTTKTILTAAATDSAGCHRDSISSLASVKLNQRLLLSGSRDGAIKVWKLKRLVGSKVYELYIYCPSGI 1600
WD40-rpts          (_________________________WD 3_________________________)                    

Query     1601 Y 1601
WD40-rpts       

3 WD40-repeats found in QUERY=CmaCh11G006540 (Len=1601):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10  1157-1195     3.60  263.48  0.01739       40.0%     33.84
  WD 2:  Seg 20  1302-1345     3.81  272.04  0.01335       30.0%     42.98
  WD 3:  Seg 33  1525-1580     3.19  246.60  0.02919       37.5%     28.32

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1157-1195   -GVLVAH---------------LQ----EHRSAVNDI-AVSTDHNFFVTASEDSTVKVWD
   WD 2 1302-1345   TRTNVNV---------------FTLKSTPEEGYVSSL-LAGPCGNWFVSGSSRGVLTLWD
   WD 3 1525-1580   RRRPLSTNLTTKTILTAAATDSAG----CHRDSISSLASVKLNQRLLLSGSRDGAIKVWK

   WD40 Template    TGECLRT---------------LS----GHTSGVTSV-SFSPDGKRLVSGSEDGTIKVWD