WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| JobID: 0S5TD1482463667 Submitted: 2016-12-23 11:27:47 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 256788885 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = Gene007467 (Len=1981) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (Gene007467, Len=1981): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSVVCAGVTSCWSRGAARCGVEGAGWAPWLAGFALLLSGLTYRPHASKDINDIHDDSSDVESPKRKSPTKEATKPSELSH 80
WD40-rpts
Query 81 VVSIGHDSLMFEVWLDTGTGTFTLRLCRPEPGCNRVLSEARGVGQLAPRRWHCVGLNVAETLRQRRVHVQVTVFIDGYEC 160
WD40-rpts
Query 161 DPVSLPIQVFSGRVASASSVTSSVSAPPPHASPAGAPIPETLLTTWTGTPLSSRHKGVAPALYLLGGPDLLLYLYARVIE 240
WD40-rpts
Query 241 LGGTASEQGAALGTVLRAARLDGRLYGALRLDMLLALLAAPRCIVGPHLLEVILNEACSSPIMSVNGDNIILMGRTDAVL 320
WD40-rpts
Query 321 LEPSLLVLLLKAWRHLETGQEYNWEVEQGGAVGRGSGFALLLSAMLLLLRDHHPRRHFNLLQMNRLDLMDYLLLALKERF 400
WD40-rpts
Query 401 LNSSAGGLCASSGADTVRLARALLGAPPHPPRLAALQDFLLLMHQASDTFVTHSRANFYFLLTAETQETSEFTDSFKRKS 480
WD40-rpts
Query 481 SRRYRRTDAARVRASGDPPDGASSDSNLILLKDMAQSGHNEEGTDSSAESTKQLKGIINAQIKEGRHYIFYYSESRILDV 560
WD40-rpts
Query 561 TGLDWIALTYVYWLSNIFVDPLGDLPVMLAACSCVTTRDVPVILLYTTFALQSDRENVSSGVAERLVVLGKHRAACVRAA 640
WD40-rpts
Query 641 IVRAAAALQRRAPAPAPPLHYLHLANQIALYEGSWELAASCAALLTKCDVPLEDQLDVSQSSPAARTAPHGGPWELAASC 720
WD40-rpts
Query 721 AALLTKCDVPLEDQLDVSQSSPAARTAPHGGPWELAASCAALLTKCDVPLEDQLDVSQSSPAARTAPHGGPWELAASCAA 800
WD40-rpts
Query 801 LLTKCDVPLEDQLDEDIWLDVTEESMYRSPPLLALLPRCLRDVPLAHNITLIIRRIIDKASIKLISEVAVAEVVVRSIRD 880
WD40-rpts
Query 881 VGMMSEPEFEGRELLLGDLHEILNRIAVKVLDNVHLSAQPIIDMHHLLRFAEGEGGAEGAGRRRALRDAQVSLYGAQLDR 960
WD40-rpts
Query 961 LQHLLHQPHHHKHANYFANAVSESGRTRRWAGGAGGEWGAALHELVCWAAAPLAPARALQPALLRQLYCTPLPLVTPPDP 1040
WD40-rpts
Query 1041 HAMRKHIHAEAESSPPAVELAITDWAREWAVSMQAGLPDRLHSDGLALEAHALLQQDEERWAKAAQRTKPAIAKAVFSKE 1120
WD40-rpts
Query 1121 ATARAVQEAAMSTTRAVVEQQNHARKLFMEHLRRADTQRAAAARAWRALCRQHAHEHGVWHDPRSYPTSWQLDDKEGPGR 1200
WD40-rpts
Query 1201 VRVRLRRAHLNIPPKFLKPQFRYKNETARAPSPLESVVGPGVLGAGGLDAGRVLHTCRGLHVSAAHEAAGEVLLSATHVH 1280
WD40-rpts
Query 1281 FVADGGGAQAWPLGSVRALHTRRWCLQERALELFLDDGHAHLLAFDAEADRLAFLKALAASAALPCKVDADTLADAMAQW 1360
WD40-rpts
Query 1361 RSGSITNWEYLMRLNGLGGRSYNDLMQYPVLPFVLADYTSKILDLDDPNTFRDLSRPVAVQDKKREHHYINTYNDLKAAR 1440
WD40-rpts
Query 1441 REACSSQLSRLPHHYASLYSNSGAVLHYLVRLPPFTELFLNYQDNNFDMPDRTFHSLATTWRLITKDSPTDVKELIPELF 1520
WD40-rpts
Query 1521 YLPELFYNNEGLNLGIRQCGEGIDEVELPPWAADARLFTLLHRQALEAAHVSETLPHWIDLVFGHKQTGPAALDAINTYY 1600
WD40-rpts
Query 1601 GFDPDALEDEVDRSAACAMVRTYGQVPRRLLRQPHPHAARELSPPGPAPPRAAPPVSACVRGARWGRYCGSPALPPPAPL 1680
WD40-rpts
Query 1681 ARRLLPAACTLLALPHARSVAVATRATALFALHNDSGNLGLALASWGHSDNIVRIKRRREPHLPLLQSYPLDQVRIELTT 1760
WD40-rpts
Query 1761 DARRRHKQGTAGHARSAQMRRRLVYKERGVSQITAACSTVAGAGGACTLALGHASGRVLCVRAEGVRALHAHRSAVRALH 1840
WD40-rpts (___
Query 1841 AHRSAVRALHAAPRQALLLSAAADGTVLLWDLHTLVSHEPPPRPHRTSVCRSERNYCRLTYIRTLPNRDMLPVTLATISE 1920
WD40-rpts ____________WD 1______________)
Query 1921 TLGDVATVHELSPRSAPVDGGGAARNIPEPDHAADTYEKDAPHKYKSLIRVHTCNGRFVGK 1981
WD40-rpts
 1 WD40-repeats found in QUERY=Gene007467 (Len=1981): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 35 1837-1871 5.67 348.78 0.00124 32.5% 48.76Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1837-1871 RALHAHRSAVRALHAAPRQALLLSAAADGTVLLWD WD40 Template RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |