Input parameters:

  Query = CmaCh14G013010 (Len=451)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G013010, Len=451):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESHLWTSIGEQTKSIDLPQNDAVLPDPILFPTSPARPSSAPVPTPWAMSSPPRTNQQPFVYHCIASLHRPDGNILSIAM 80  
WD40-rpts              (_________________WD 1_________________)             (________________WD

Query       81 TKEFIYVGSESGRIQSWKLQECPGVGFIKASSGQVGAMFACGRMLFSSHGDYRVRIWEVKMGNKRLKPKKISTLPPKRSL 160 
WD40-rpts       2_______________)   (________________WD 3_______________)                      

Query      161 FVGRNGRRQLQQHSDHISCLAYNDADKLLYTGSWDSTVKAWNISENRCVDSFVAHEGHVNAIVINQEDGCVFTCSSDTSV 240 
WD40-rpts        (_________________WD 4_________________)   (_________________WD 5_____________

Query      241 KIWRRVYGESSHILTMILKFQLSPVNALALSLLSSSSKPCNFLYSGYSDGHINFWEKESSSSRYNHGGLLQGHHFAVLCL 320 
WD40-rpts      ___)       (____________________WD 6___________________)       (________________

Query      321 VTVKDLILSGSEDTAIRIWRREERGNGYLHWCLSVIEGHHGPVRCLAAGMEMDNMGNMLVCSASLDQSFKVWRVKLFPPP 400 
WD40-rpts      WD 7_______________)         (___________________WD 8___________________)       

Query      401 LMNRSEMNVEQLKKEIGGCEMNNPVLSPSWVEKRKLQFDDYYVSNNNNNHF 451 
WD40-rpts      (____________________WD 9____________________)     

9 WD40-repeats found in QUERY=CmaCh14G013010 (Len=451):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-48       6.86  397.84  0.00027       10.0%      6.29
  WD 2:  Seg  3    62-98       4.56  303.10  0.00511       22.5%     49.10
  WD 3:  Seg  7   102-138      6.82  396.22  0.00028       15.0%     50.16
  WD 4:  Seg 12   163-202     10.85  562.67  1.6e-06       27.5%     48.10
  WD 5:  Seg 15   206-244      9.31  499.43  1.2e-05       17.5%     53.63
  WD 6:  Seg 19   252-296      6.91  399.95  0.00025       27.5%     56.47
  WD 7:  Seg 23   304-340      6.70  391.56  0.00033       30.0%     42.90
  WD 8:  Seg 26   350-393      7.40  420.27  0.00013       27.5%     51.87
  WD 9:  Seg 30   401-446      4.00  279.91  0.01047        7.5%     19.57

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-48     IGEQTKS------IDLPQNDAVLPDP------ILF-----PTSPARPSSAPVPTPWA
   WD 2   62-98     -YHCIAS------LHRPDGNI--LSI------AMT-----KEFIYVGSESGRIQSWK
   WD 3  102-138    -CPGVGF------IKASSGQVGA--M------FAC-----GRMLFSSHGDYRVRIWE
   WD 4  163-202    GRNGRRQ------LQQHSDHISCLAY------NDA-----DKLLYTGSWDSTVKAWN
   WD 5  206-244    -NRCVDS------FVAHEGHVNAIVI------NQE-----DGCVFTCSSDTSVKIWR
   WD 6  252-296    -HILTMI------LKFQLSPVNALALSLLSSSSKP-----CNFLYSGYSDGHINFWE
   WD 7  304-340    -YNHGGL------LQGHHFAVLCLVT------VKD-------LILSGSEDTAIRIWR
   WD 8  350-393    -HWCLSV------IEGHHGPVRCLAA------GMEMDNMGNMLVCSASLDQSFKVWR
   WD 9  401-446    LMNRSEMNVEQLKKEIGGCEMNNPVL------SPS-----WVEKRKLQFDDYYVSNN

   WD40 Template    TGECLRT------LSGHTSGVTSVSF------SPD-----GKRLVSGSEDGTIKVWD