WDRR: WD40 Repeat Recognition
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| JobID: 0J6TP1659504739 Submitted: 2022-08-03 13:32:19 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79746749 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh17G011910 (Len=433) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh17G011910, Len=433): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEETPVEGDTKKDVEIAPALIAVHPAEKSVAVAVGSDLRVFDLVDNCPVSLIDESGGSYHKDSIRTICYGSNGQLFVSAG 80
WD40-rpts (_________________WD 1________________) (________________WD 2_______
Query 81 DDKTVKIWSTESWRCIYNVGSEKRVSAAAISPNGMHVCFADKFGVIWVVDLDGGVDGNQPLVNKKAVSLLSHYCSIITSL 160
WD40-rpts ________) (________________WD 3________________) (____________
Query 161 EFSLDGRFLVSADRDFKIRVTTFPTKPVNEAHEIQSFCLGHTDFVSCIAFISKLECPHGFLISGSGDSTVRLWDILSGSL 240
WD40-rpts ___WD 4______________) (___________________WD 5__________________)
Query 241 LATCEIGDKVELLESKEREGCHSAVTSICTIADGTLVAVAIQSLHGIILLNCDLSNHSLSVVKVVSISEETFIPTSLSSS 320
WD40-rpts (____________________WD 6____________________) (______________WD 7________
Query 321 CSTRYLWMVTGVSGLHNLGHSSLVRVKVISGFNKDNPNSTENELSILEDDAIPGGEKLLEKLQGGVTFDEKVFLAAAEAV 400
WD40-rpts ______) (_________________WD 8________________)
Query 401 KTAMSNLLTKKQYSTEKRDFRKRTRNDRKLKQG 433
WD40-rpts
 8 WD40-repeats found in QUERY=CmaCh17G011910 (Len=433): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 4-42 6.97 402.69 0.00023 15.0% 43.50 WD 2: Seg 5 53-89 8.68 473.05 2.6e-05 22.5% 45.09 WD 3: Seg 8 93-130 7.91 441.50 7.0e-05 25.0% 58.10 WD 4: Seg 12 148-182 8.62 470.87 2.8e-05 37.5% 49.52 WD 5: Seg 15 192-234 7.80 436.77 8.1e-05 35.0% 47.49 WD 6: Seg 19 246-291 6.66 389.77 0.00035 22.5% 47.53 WD 7: Seg 22 294-327 4.92 317.91 0.00323 22.5% 44.11 WD 8: Seg 25 331-369 8.20 453.46 4.8e-05 22.5% 55.30Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 4-42 TPVEG-----DTKKDVEIAPAL-IAVHPAEK----SVAVAV-GS-DLRVFD WD 2 53-89 DES--------GGSYHKDSIRT-ICYGSNGQ----LFVSAGDDK-TVKIWS WD 3 93-130 -WRCI-----YNV-GSEKRVSA-AAISPNGM----HVCFADKFG-VIWVVD WD 4 148-182 ----------SLLSHYCSIITS-LEFSLDGR----FLVSADRDF-KIRVTT WD 5 192-234 -HEIQ-----SFCLGHTDFVSC-IAFISKLECPHGFLISGSGDS-TVRLWD WD 6 246-291 IGDKVELLESKEREGCHSAVTS-ICTIADGT----LVAVAIQSLHGIILLN WD 7 294-327 ------------LSNHSLSVVKVVSISEETF----IPTSLSSSC-STRYLW WD 8 331-369 -GVSG-----LHNLGHSSLVRV-KVISGFNK----DNPNSTENE-LSILED WD40 Template TGECL-----RTLSGHTSGVTS-VSFSPDGK----RLVSGSEDG-TIKVWD |
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