WDRR: WD40 Repeat Recognition
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| JobID: 0FHWK1659502368 Submitted: 2022-08-03 12:52:48 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79748402 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh14G013020 (Len=461) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh14G013020, Len=461): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASLNSPDSSPPNISFSIRETRKTTTTPTATATSSTEAAAGRRFYRSSSTKEPSFSQFPFTPPHLNNCPSLPQSFHNSPA 80
WD40-rpts (_________________WD 1_________________)(________________________WD 2_____
Query 81 TSPLHPASTTAAAPTKLSDLLISHRCVSSVLKKDGQILSIAIFNDILYTGSDSNLVRIWKLPDFTECGQLKTKASMAVAL 160
WD40-rpts __________________) (________________WD 3_______________) (________________
Query 161 QVSHDKVYAAYSDCKVRVWQRNSDRGLKHLRLATIPATGNYVRSYISGKDKMTKHMGPITSLAINISDDVLYSSSLDKSV 240
WD40-rpts WD 4_______________) (_________________WD 5_____________
Query 241 KIWRVSDFKCVETIQAHSEPINAIIAADDGLLYTASDDATVRVWRRNFSRSDRPTHSLVVTLPTKFSPVKTLSLATDSGL 320
WD40-rpts ___) (________________WD 6________________) (_________________WD 7___
Query 321 LYGGCSDGYLHFWLKGWFSGQLKYGGSLQGHTHAVMCLATVGKYVVSGSADTTCRVWARDEVDCQMHTCLAVLVGHRGPV 400
WD40-rpts _____________) (________________WD 8_______________) (_____________
Query 401 RCVAAFSGSVSEEVVEEEADDGCTICSGSLDGVLKVWRVTCTKNRTRNRSLQNGTEYSDVM 461
WD40-rpts __________WD 9_______________________)
 9 WD40-repeats found in QUERY=CmaCh14G013020 (Len=461): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 7-46 5.21 329.99 0.00222 7.5% 1.95 WD 2: Seg 2 47-99 4.35 294.33 0.00671 20.0% 4.81 WD 3: Seg 3 104-140 7.09 407.46 0.00020 17.5% 54.22 WD 4: Seg 7 144-180 6.96 402.24 0.00024 17.5% 53.26 WD 5: Seg 13 206-244 9.04 488.18 1.6e-05 22.5% 45.20 WD 6: Seg 16 248-285 8.68 473.03 2.6e-05 27.5% 52.28 WD 7: Seg 20 296-334 8.64 471.55 2.7e-05 27.5% 55.21 WD 8: Seg 24 342-378 7.44 421.80 0.00013 37.5% 47.12 WD 9: Seg 28 387-438 7.75 434.60 8.6e-05 42.5% 56.58Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 7-46 PDS-----------SPPNISFSIRETRKTTT-------------TP--TATATSSTEAAAGRRFYR WD 2 47-99 SSSTKEPSFSQFPFTPPHLNNCPSLPQSFHN-------------SPATSPLHPASTTAAAPTKLSD WD 3 104-140 -HR-----------CVSSVLKKDGQILSIAI-------------FN--D--ILYTGSDSNLVRIWK WD 4 144-180 -FT-----------ECGQLKTKASMAVALQV-------------SH--DK--VYAAYSDCKVRVWQ WD 5 206-244 -IS-----------GKDKMTKHMGPITSLAI-------------NI--SDDVLYSSSLDKSVKIWR WD 6 248-285 -FK-----------CVETIQAHSEPINAIIA-------------AD--DG-LLYTASDDATVRVWR WD 7 296-334 -HS-----------LVVTLPTKFSPVKTLSL-------------AT--DSGLLYGGCSDGYLHFWL WD 8 342-378 -LK-----------YGGSLQGHTHAV--MCL-------------AT--VGKYVVSGSADTTCRVWA WD 9 387-438 -HT-----------CLAVLVGHRGPVRCVAAFSGSVSEEVVEEEAD--DGCTICSGSLDGVLKVWR WD40 Template TGE-----------CLRTLSGHTSGVTSVSF-------------SP--DGKRLVSGSEDGTIKVWD |
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