WDRR: WD40 Repeat Recognition
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| JobID: 0DEJC1659518666 Submitted: 2022-08-03 17:24:26 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79732152 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_5G013310 (Len=393) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_5G013310, Len=393): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGTVEPSNSRKYGVPFYAAAWLPSASLQSKHQPSQSQDPPHQSPDPDISSADNKSLPSHPASYYVAAAGGGGEGRSGISN 80
WD40-rpts (__________________WD 1_________________) (______________WD 2______
Query 81 ALILAHFDFESRSLSDHPVAKYGTGSDLPYRMAIHPAGDGIICSLPKSCSLFKVDTEKDAGDETLGLKLSQEVLSPLEDV 160
WD40-rpts _______) (________________WD 3________________) (__________
Query 161 GQQLSLAFNNEGSLLATGGEDGNLRVLKWPSLDIVLNEPSSHSSVKDLDFSPDGKYLVSLGGPCRVWDITSSTLVTSLPK 240
WD40-rpts _______WD 4________________) (________________WD 5_______________) (________
Query 241 ENDEVFISCKFSLTNNGDMVLYTAAVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIMNS 320
WD40-rpts ____________WD 6____________________) (_________________WD 7________________)(
Query 321 TSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGMNMWIIIFILLIAIAAYFFIQQS 393
WD40-rpts ___________________WD 8__________________)
 8 WD40-repeats found in QUERY=CsaV3_5G013310 (Len=393): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-41 4.76 311.26 0.00397 5.0% -3.49 WD 2: Seg 2 56-88 6.69 390.83 0.00034 12.5% 44.77 WD 3: Seg 5 96-133 6.29 374.55 0.00056 5.0% 50.88 WD 4: Seg 9 150-188 8.17 451.95 5.0e-05 22.5% 52.99 WD 5: Seg 13 192-228 7.79 436.33 8.2e-05 37.5% 54.79 WD 6: Seg 17 232-277 5.91 358.80 0.00091 17.5% 52.36 WD 7: Seg 21 281-319 8.80 478.14 2.2e-05 15.0% 57.74 WD 8: Seg 25 320-362 8.77 476.95 2.3e-05 35.0% 53.53Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-41 MGT---VEPSNSRKYGVPFY---AAAWLPSASL----QSKHQPSQSQDPPH WD 2 56-88 -----------LPSHPASYY---VAAAGGGGEG----RSGISNALILAHFD WD 3 96-133 -DH---PV-AKYGTGSDLPY---RMAIHPAGDG----IICSL-PKSCSLFK WD 4 150-188 -SQ---EV-LSPLEDVGQQL---SLAFNNEGSL----LATGGEDGNLRVLK WD 5 192-228 -LD---IV-LNEPSSHSSVK---DLDFSPDGKY----LVSL--GGPCRVWD WD 6 232-277 -ST---LV-TSLPKENDEVFISCKFSLTNNGDMVLYTAAVTGKGGSIVSWN WD 7 281-319 -WR---RV-ASKLITRDNIT---AFNVSSSGRL----LACGTTQGDVLIMN WD 8 320-362 STSLQVRK-IVKKAHLGFVT---ALSFSPDSRA----LVSASMDSSARVTV WD40 Template TGE---CL-RTLSGHTSGVT---SVSFSPDGKR----LVSGSEDGTIKVWD |
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