WDRR: WD40 Repeat Recognition
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| JobID: 0CUD41471472876 Submitted: 2016-08-18 06:27:56 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 267778594 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = TPR1 (Len=1120) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (TPR1, Len=1120): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80
WD40-rpts
Query 81 YLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK 160
WD40-rpts
Query 161 LQFPTLRTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
WD40-rpts
Query 241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPSGDSDHVSKRTRPMGISDEVSLGV 320
WD40-rpts (_______________
Query 321 NMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWD 400
WD40-rpts _WD 1________________) (_________________WD 2_________________)
Query 401 LSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVT 480
WD40-rpts (____________________WD 3___________________) (__________________WD 4______
Query 481 TCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSA 560
WD40-rpts ___________) (__________________WD 5_________________) (___________________W
Query 561 DGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGG 640
WD40-rpts D 6__________________) (_________________WD 7_________________)(______________
Query 641 LQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASVVSIPGMNGDSRNMVDV 720
WD40-rpts _____WD 8___________________) (_________________________WD 9__________
Query 721 KPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATAS 800
WD40-rpts _______________) (_________________WD10________________)
Query 801 LPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 880
WD40-rpts (______________WD11______________) (_________________WD12____
Query 881 IAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTSSLS 960
WD40-rpts _____________) (_________________WD13________________) (_______________
Query 961 DTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVN 1040
WD40-rpts ___WD14_________________) (___________________WD15__________________) (
Query 1041 PSAYLPASLSNSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1120
WD40-rpts ___________________WD16__________________)
 16 WD40-repeats found in QUERY=TPR1 (Len=1120): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 305-342 4.56 303.16 0.00510 15.0% 14.34 WD 2: Seg 4 345-384 5.35 335.53 0.00187 22.5% 54.56 WD 3: Seg 9 401-445 7.08 406.97 0.00020 17.5% 49.77 WD 4: Seg 12 452-492 7.39 419.94 0.00014 35.0% 52.74 WD 5: Seg 16 496-536 7.39 419.91 0.00014 30.0% 57.93 WD 6: Seg 20 540-582 6.21 371.03 0.00062 22.5% 55.62 WD 7: Seg 24 586-625 7.64 430.27 9.9e-05 32.5% 57.62 WD 8: Seg 28 626-669 6.78 394.75 0.00030 20.0% 56.31 WD 9: Seg 33 681-736 3.13 243.88 0.03171 15.0% 26.46 WD10: Seg 37 747-785 6.66 389.87 0.00035 7.5% 46.32 WD11: Seg 43 818-851 4.51 300.82 0.00549 12.5% 45.31 WD12: Seg 46 855-894 7.01 404.06 0.00022 22.5% 59.08 WD13: Seg 50 898-936 8.90 482.29 2.0e-05 32.5% 58.10 WD14: Seg 54 945-985 3.02 239.20 0.03658 15.0% 41.65 WD15: Seg 58 987-1029 6.84 397.40 0.00027 22.5% 58.15 WD16: Seg 63 1040-1082 5.15 327.22 0.00242 10.0% 46.70Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 305-342 -----K----R-----TRPMG---I-SDE---VSLGV--N----------------MLP-MTF-PG--QAHGHN----QTFKAPD WD 2 345-384 -P---K----T-----VARTL---S-QGS---SPMSM--D----------------FHP-IKQTLL--LVGTNV----GDIGLWE WD 3 401-445 LS---K----CSMPLQAALVK---E-PVV---SVNRV--I----------------WSP-DGS-LF--GVAYSR----HIVQLYS WD 4 452-492 -M---R----Q-----HLEID---A-HVG---GVNDI--A----------------FST-PNK-QLCVTTCGDD----KTIKVWD WD 5 496-536 -G---V----K-----RYTFE---G-HEA---PVYSICPH----------------YKE-NIQ-FI--FSTALD----GKIKAWL WD 6 540-582 -M---G----S-----RVDYE---A-PGR---WCTTM--A----------------YSA-DGT-RL--FSCGTSKDGESFIVEWN WD 7 586-625 -G---A----V-----KRTYQ---GFHKR---SLGVV--Q----------------FDT-TKN-RY--LAAGDD----FSIKFWD WD 8 626-669 MD---TIQLLT-----AIDAD---G-GLQ---ASPRI--R----------------FNK-EGS-LL--AVSAND----NMIKVMA WD 9 681-736 EN---L----S-----SESSK---P-AIN---SIPMV--ERPASVVSIPGMNGDSRNMV-DVK-PV--ITEESN----DKSKVWK WD10 747-785 -R---S----L-----RLPEN---M-RVT---KISRL--I----------------FTN-SGN-AI--LALASN----AIHLLWK WD11 818-851 -----------------VAET---N-PEE---AVPCF--A----------------LSK-NDS-YV--MSASGG-----KISLFN WD12 855-894 -F---K----T-----MATFM---P-PPP---AATFL--A----------------FHPQDNN-II--AIGMDD----STIQIYN WD13 898-936 -D---E----V-----KSKLK---G-HSK---RITGL--A----------------FSN-VLN-VL--VSSGAD----AQLCVWN WD14 945-985 -S---K----V-----LQIPQ---G-RSTSSLSDTRV--Q----------------FHQ-DQV-HF--LVVH-E----TQLAIYE WD15 987-1029 TKLECM----K-----QWPVR---E-SAA---PITHA--T----------------FSC-DSQ-LI--YTSFMD----ATICVFS WD16 1040-1082 NP---S----A-----YLPASLSNS-NVH---PLVIA--A----------------HPQ-ESN-MF--AVGLSD----GGVHIFE WD40 Template TG---E----C-----LRTLS---G-HTS---GVTSV--S----------------FSP-DGK-RL--VSGSED----GTIKVWD |
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