Input parameters:

  Query = CsaV3_2G029520 (Len=866)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_2G029520, Len=866):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVETFFQAVSLFAAPNYPNAIAWSDENLIALASGPLVTILNPASPFGARGTITIPAADPLRIGVIERKDLFSDCLLTTCL 80  
WD40-rpts                               (__________________WD 1_________________)      (_______

Query       81 SRDDQPRAQSVAWSPIGMAPNAGCLLAVCTSEGCVKLYRPPFCDFSAEWIEIVDISNKLYDYLESIKYGELDVLSSKCSD 160 
WD40-rpts      ______________WD 2____________________)(______________________WD 3______________

Query      161 IPVKESGSADDVHEHLTKKKNSKRRKKDELKSDNESSLNQSLEKSKEKPLRRRSEDSSVPPFISAQQYASRSAMLLSLVI 240 
WD40-rpts      _______)                                                                   (____

Query      241 AWSPVIKPSHKAHLHQNSSASVLAVGTKSGKVSFWKVNVAECYSLTECMVPTRALLVGILQAHNSWINCISWMLFDSDSS 320 
WD40-rpts      ______________WD 4_________________)                 (____________________WD 5__

Query      321 SPKVLVATGSADGSVKIWQCYCEELLASSDSNFASFSLLKEVISGEGVPTVLSLNMPKLSEHKLFLAIGRGSGSLEIRIF 400 
WD40-rpts      __________________)                        (________________WD 6________________

Query      401 NLSSSEFDNILLSDAHCHVVTGVAWAVDGRYLFTCSEDNTLRGWSLDESSLHEVPISSRIPELGGSIDLPDTFRSCFGIA 480 
WD40-rpts      )(___________________WD 7___________________)                                   

Query      481 MSPGNLVGAVVRNFDLDSLDKMYQARTQKAAVQFFWIGGEEIEVMPNSSYFYTENVSNMSKKEFVRWESSILWSLNQFKN 560 
WD40-rpts           (______________________WD 8_____________________)                     (____

Query      561 LNKPMVVWEVVAALLAFRHSIPEYVDHILLKWLATSYLHWNNELSATKILSHVSKNVSTFSTRQLHLLNIICRRVVLSES 640 
WD40-rpts      __________________________________WD 9______________________________________)   

Query      641 IQDQVNDNLQNLDLLSLEGLDDSENEMHILCKKLLLSSERELRQRLIGLCFFACAKLRSLSITEYRPGFWYPIGLTEMQQ 720 
WD40-rpts                                                                                      

Query      721 WVTSNPEHLQDSIKDIASQARKKRWSKHSSTEQCTYCSAPVPFESPEFGVCQGGKRKPGVSQSHKLIRCSVSMQVCPATT 800 
WD40-rpts                                                                                      

Query      801 PLWFCMCCCRSAFRLAPDILFQMSETPNFHSLKLSDSEIPSKPLCPFCGILLQRRQPDFLLSACPV 866 
WD40-rpts                                                                        

9 WD40-repeats found in QUERY=CsaV3_2G029520 (Len=866):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    26-66       3.81  272.25  0.01327       15.0%     15.76
  WD 2:  Seg  5    73-119      4.67  307.68  0.00444       25.0%     39.82
  WD 3:  Seg  8   120-168      3.05  240.75  0.03490        7.5%     -1.05
  WD 4:  Seg 10   236-276      6.88  398.85  0.00026       12.5%     49.07
  WD 5:  Seg 14   294-339      6.56  385.69  0.00039       27.5%     44.00
  WD 6:  Seg 19   364-401      4.36  294.62  0.00665       20.0%     33.56
  WD 7:  Seg 22   402-445      8.79  477.83  2.3e-05       30.0%     55.62
  WD 8:  Seg 29   486-534      6.04  364.07  0.00077       10.0%     51.20
  WD 9:  Seg 35   556-637      2.94  235.91  0.04044        7.5%     13.67

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-66     -E--------NL-------------I-------------A-LASGP--LV---------TILNPA-----------SPF-------GAR------GTITI--PAADPLRI--------GVIE
   WD 2   73-119    -D--------CL-------------L-------------T-TCLSRDDQP---------RAQ--S-----------VAW-------SPIGMAPNAGCLLA--VCTSEGCV--------KLYR
   WD 3  120-168    PP--------FC-----------------------------DFSAE--WI---------EIV--DISNKLYDYLESIKY-------GEL------DVLSS--KCSDIPVK--------ESGS
   WD 4  236-276    LS--------LV-------------I-------------AWSPVIK--PS---------HKA--H-----------LHQ-------NSS------ASVLA--VGTKSGKV--------SFWK
   WD 5  294-339    -A--------LL-------------V-------------G-ILQAH--NS---------WIN--C-----------ISWMLFDSDSSSP------KVLVA--TGSADGSV--------KIWQ
   WD 6  364-401    SG--------EG-------------V-------------P-TV------L---------SLN--M-----------PKL-------SEH------KLFLAIGRGSGSLEI--------RIFN
   WD 7  402-445    LS----SSEFDN-------------I-------------L-LSDAH--CH---------VVT--G-----------VAW-------AVD------GRYLF--TCSEDNTL--------RGWS
   WD 8  486-534    LV--------GA-------------V-------------V-RNFDL--DSLDKMYQARTQKA--A-----------VQF-------FWI------GGEEI--EVMPNSSY--------FYTE
   WD 9  556-637    NQFKNLNKPMVVWEVVAALLAFRHSIPEYVDHILLKWLAT-SYLHW--NN---------ELS--A-----------TKI-------LSH------VSKNV--STFSTRQLHLLNIICRRVVL

   WD40 Template    TG--------EC-------------L-------------R-TLSGH--TS---------GVT--S-----------VSF-------SPD------GKRLV--SGSEDGTI--------KVWD