WDRR: WD40 Repeat Recognition
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| JobID: 03M4J1659513981 Submitted: 2022-08-03 16:06:21 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79737224 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_1G011890 (Len=938) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_1G011890, Len=938): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAKRGYKLQEFAAHSGNVNCLSIGKKACRLFITGGDDYKVNLWAIGKPNSLMSLCGHTNPVESVAFDSAEVLVLAGASSG 80
WD40-rpts (__________________WD 1_________________)(__________________WD 2_____________
Query 81 AIKLWDLEEAKMVRTLSGHRSNCTAVEFHPFGEFFASGSRDTNLKIWDIRKKGCIHTYKGHTQGISTIKFTPDGRWVVSG 160
WD40-rpts _____) (_________________WD 3________________) (_________________WD 4_______
Query 161 GFDSAVKVWDLTAGKLMHDFKFHEGPIRSIDFHPLEFLLATGSADKTVKFWDLETFELIGSTRPEAAGVRAITFHPDGRT 240
WD40-rpts _________) (_________________WD 5________________) (________________WD 6____
Query 241 LFSGLDESLKVYSWEPVICHDSVDMGWSTLGDLCIHAGKLLSCSSYRNSVGVWVADVALIEPYGASSVSGQKEPKEQNLG 320
WD40-rpts ____________) (________________WD 7________________)(_________________________
Query 321 SAFKNSLASKSTGSDLVTSNLQSLSPDYETKEIKNIYIDTTGGKPVSPQKAESLSSPKIVFALDSKEISYNASKKQNLAS 400
WD40-rpts WD 8________________________) (_______________WD 9_______________
Query 401 RVEVKSSELSKDKPPVIPCDSPEVKDPPSSVRESITFSKTRRGMLLRPAHIRKPSNSKIDLEKLSVSVDSSRKTDLERLP 480
WD40-rpts )
Query 481 VVDSVNVCNTTNDLNKAPVQNLKTSVVSEVIHVDPCGTNSDLISIEKFEKIPSVSAETTSEQETCNKSVENSEGANSVKF 560
WD40-rpts
Query 561 VNGVAVVPGRTRTLVERFERREKTNDVQTTISPSNVLEPEKTREQTNSLEVQVVTPQILETEKTHEQTNDFRVHEVTMPS 640
WD40-rpts
Query 641 HVSETETRCERTSNYEVQAVAIPSHVSEPEKAREQTNNYEVRAMVIPRTPETKRMGINYEAKPRSNHEAKPRSNYEAKPR 720
WD40-rpts
Query 721 SNYEAKTRNNYEAKSTLISSHVPETDKTDNLQKGEPQISGRDSTSANDRDVIEDLMQSHDVFLSTLRSRLTKLQVVRHFW 800
WD40-rpts
Query 801 ERNDMKGAINAMTKLPDHSVQADVISVLVDKMDVLTLDLFSCLLPVLVGLLDSKIERHASLSMEILVKLVAVFGHVISSA 880
WD40-rpts
Query 881 VSAPPVVGVDLHAEQRVQCCKQCFTQLQKVQKIIPSFVRRGGSLARSAQELNLVLQQC 938
WD40-rpts
 9 WD40-repeats found in QUERY=CsaV3_1G011890 (Len=938): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 4-44 7.47 423.39 0.00012 22.5% 55.37 WD 2: Seg 5 45-86 9.32 499.71 1.1e-05 40.0% 56.08 WD 3: Seg 9 90-128 10.44 545.73 2.7e-06 47.5% 57.54 WD 4: Seg 13 132-170 10.67 555.22 2.0e-06 45.0% 56.12 WD 5: Seg 17 174-212 9.23 496.10 1.3e-05 32.5% 56.59 WD 6: Seg 21 216-253 7.14 409.74 0.00019 32.5% 56.77 WD 7: Seg 25 257-294 5.10 325.25 0.00257 20.0% 56.78 WD 8: Seg 29 295-349 4.50 300.66 0.00551 12.5% 32.71 WD 9: Seg 32 366-401 6.60 387.13 0.00038 7.5% 42.00Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 4-44 RG--YKL---------------QEFAAHSGNVNCLSIGKKACRLFITGGDDYKVNLWA WD 2 45-86 IGKPNSL---------------MSLCGHTNPVESVAFDSAEVL-VLAGASSGAIKLWD WD 3 90-128 -A--KMV---------------RTLSGHRSNCTAVEFHPFGEF-FASGSRDTNLKIWD WD 4 132-170 -K--GCI---------------HTYKGHTQGISTIKFTPDGRW-VVSGGFDSAVKVWD WD 5 174-212 -G--KLM---------------HDFKFHEGPIRSIDFHPLEFL-LATGSADKTVKFWD WD 6 216-253 -F--ELI---------------GSTRPEAAGVRAITFHPDGRT-LFSGL-DESLKVYS WD 7 257-294 -V--ICH---------------DSVDMGWSTLGDLCIH-AGKL-LSCSSYRNSVGVWV WD 8 295-349 AD--VALIEPYGASSVSGQKEPKEQNLGSAFKNSLASKSTGSD-LVTSNLQSLSPDYE WD 9 366-401 ------V---------------SPQKAESLSSPKIVFALDSKE-ISYNASKKQNLASR WD40 Template TG--ECL---------------RTLSGHTSGVTSVSFSPDGKR-LVSGSEDGTIKVWD |
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