Input parameters:

  Query = gi_300555937_emb_CBV08944.1_ (Len=445)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_300555937_emb_CBV08944.1_, Len=445):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVQLPPDILAQGVIAASAGNHAQGVALAANRLGTKAIIVMPITTPQVKVDAVRMRGGAVVLHGNTYDDAYSYARELEVEK 80  
WD40-rpts                                                                                      

Query       81 GLTFIHPFDDPHVIAGQGTIGMEILRQYQQPIHAIFVAIGGGGLISGIGAYVKRLRPEIKIIGVEPVDADAMSQSLKAGH 160 
WD40-rpts                                                             (________________________

Query      161 RVRLSQVGLFADGVAVREVGEETFRLCQQYVDEIILVDTDDTCAAIKDVFEDTRSILEPAGALAIAAAKAYAEREQIEGQ 240 
WD40-rpts      ____________WD 1___________________________________)                            

Query      241 TLIAVACGANMNFDRLRFVAERAQLGERREAIFAVTIPEERGSIRQFCECIGNRNLTEFNYRIADEKTAHIFVGVQIQNR 320 
WD40-rpts                                                                                      

Query      321 ADAAKMVETFEAQGFETLDLTDDELTKLHLRHMVGGHSPLAQNELLYRFEFPERPGALMKFVTSMSPAWNISLFHYRNNG 400 
WD40-rpts                                                                                      

Query      401 ADYGRIVVGIQVPPHEMEEWQAFLDNLGYRYWDENKNPAYKLFLG 445 
WD40-rpts                                                   

1 WD40-repeats found in QUERY=gi_300555937_emb_CBV08944.1_ (Len=445):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   136-212      2.88  233.55  0.04344       20.0%      5.37

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  136-212    RPEIKIIGVEPVDADAMSQSLKAGHRVRLSQVGLFADGVAVREVGEETFRLCQQYVDEIILVDTDDTCAAIKDVFED

   WD40 Template    TGECLRTLSGHTSG--------------VTSVSFSPDGKRLVSGS----------EDGTIKVW-------------D