Input parameters:

  Query = gi_238057982_sp_B2J2A2.1_GLYA_NOSP7 (Len=427)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_238057982_sp_B2J2A2.1_GLYA_NOSP7, Len=427):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTRTNSDFLSSTDPAIAELINDELQRQRDHLELIASENFTSAAVLAAQGSVLTNKYAEGLPGKRYYGGCEYIDKIEQLAI 80  
WD40-rpts                                                                                      

Query       81 NRAKQIFGAAHANVQPHSGAQANFAVFLSLLQPGDKIMGMDLSHGGHLTHGSPVNVSGKWFQVSHYGVSQQTEQLDYDQI 160 
WD40-rpts                                                                                      

Query      161 RELALRERPKLLICGYSAYPRIIDFEKFRSIADEVGAYLLADIAHIAGLVASGLHPDPIPHCHVVTTTTHKTLRGPRGGL 240 
WD40-rpts                                                         (____________________________

Query      241 ILTSDAELGKKLDKSVFPGTQGGPLEHVIAGKAVAFGEALKPEFKTYSAQVIENARALAEQLQNRGLKLVSNGTDNHLLL 320 
WD40-rpts      _________________________WD 1___________________________________________________

Query      321 VDLRSVNLTGKQADQLVSTVNITANKNTIPFDPQSPFVTSGLRLGSPAMTTRGLGVAEFTEIANIISDRLLSPDSDVVTQ 400 
WD40-rpts      _)                                                                              

Query      401 DCRQRVAALCDRFPLYPHLEIPVPALA 427 
WD40-rpts                                 

1 WD40-repeats found in QUERY=gi_238057982_sp_B2J2A2.1_GLYA_NOSP7 (Len=427):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   212-322      3.43  256.50  0.02154       32.5%     16.27

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  212-322    SGLHPDPIPHCHVVTTTTHKTLRGPRGGLILTSDAELGKKLDKSVFPGTQGGPLEHVIAGKAVAFGEALKPEFKTYSAQVIENARALAEQLQNRGLKLVSNGTDNHLLLVD

   WD40 Template    TG--------------ECLRTLSGHTSGVTSVSF--------------SPDG-----------------K--------------------------RLVSGSEDGTIKVWD