Input parameters:

  Query = gi_186687164_ref_YP_001870307.1_ (Len=1420)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186687164_ref_YP_001870307.1_, Len=1420):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASTTIFTPGNLLVSRSVYTGTASTVTFPGTLPNGVASVADGTYPNVFSNESVDGSFGVTSPIFLDQVTPSGTLVNFENV 80  
WD40-rpts              (__________________WD 1_________________)                               

Query       81 TQTVSNQLGKNLSTSFPSKSELALNLTPDGTGVTFVSYLAASNTLDVSNSNTPGHVDNTNPVSSVGTIQRAITQIDSNGN 160 
WD40-rpts                                                                                      

Query      161 VVDLTPINAYSGNNGRAGLLGSNGLYYTVGNAGNGGSISIAGATTTEGSTTIGTTDITGLVVGQAIAGSNIPATDANGVP 240 
WD40-rpts                                                                                      

Query      241 VTVVSTDPTTNTFVISAPATVTGVDAKAKIIQTGTTLSDLSANTGVQAIQPGDTTGNTTVVGIEKGSVGSTTGNQYGFSI 320 
WD40-rpts                                                                                      

Query      321 TDLPGITTGDKTGKDDNFRGLTLNPYDNSLYVSKGSGSNGVNTVYKVTPTSGTLPTLDNASTASITILPGFPTDLANGST 400 
WD40-rpts                                                                                      

Query      401 NFYPFGLWFANPTTLYVADEGAGIKNEKSAADLLLAANDANAGLSKWSLANGTWHLDYTLQNGLNLGQDYSSSVADGPNG 480 
WD40-rpts                                                                                      

Query      481 EIYSAPTATAGLRNITGQVNGDGTVTIYGVTSTVSTQTDQGADPNKVVAITDLVSATNLPITESFNTVESAKYGEVLRGV 560 
WD40-rpts                                                                                      

Query      561 SFTPSSTPVSPPVVSTQPPASPTFNHVLIISIDGLHNSDLSVANLQSSLSNIKRLQGEGVTYTNAFTSAPSDSFPGELNY 640 
WD40-rpts                                                                                      

Query      641 ITGANPGTTGVFYDKSYSRTLYAPGTTAAEIAAGTAKPGTGVEFAENVDASWAAGGTLDGGQGFDTSQLPVDSNGNPVYP 720 
WD40-rpts                                                                                      

Query      721 NQYLKVNTIFDVANAAGLSTAWSDKHPAAYTILAGPSSDPTQFNFATGKVGSIDDYSSLEINAAVAIDPTKPGTLPTSTG 800 
WD40-rpts                                                                                      

Query      801 ALVDQSTGTPYSNTNPDITSNFFNDATKGNPALFKAPPTGFSANQFTSVATTSAYDDLKVKQILNEIDGFNAAGTTKVDT 880 
WD40-rpts                                                                                      

Query      881 PAIFGLNLQAVSVAEKEPATQFNGGGIDANGNARPDLVTAIDHTDQSIGLILDELQKQGLDSSTLVVLTAKHGQNPVQDP 960 
WD40-rpts                                                                                      

Query      961 TVGLNSTFDSVTGAVGGDGNLTAFGALLAQNGIQLDAERGGDTSSLLFLKNPSDVQKAVALLNDKNYSFDSAIDPNTGVA 1040
WD40-rpts                                                                                      

Query     1041 FSTEDAAAQGTVLYGQGIINAGLGDPATSDRTPDIVVELNNGYFFGNATKKRAEHGGFTDADTHVALIAGSSGLASSLQG 1120
WD40-rpts                                                                                      

Query     1121 TTNTQTVSTTQIAPTTLQSLGLDPNQLQGVQIDGTQLLPGLTQPAPDITFGSTNSDDVTVNSNQILFAGNGADTVESANP 1200
WD40-rpts                                                                                      

Query     1201 NTTVMAGNGDDTVFVGSDSSVFGNDGNDQVFVGADGQAGNTNVDGGNGNDTITVVEAKADNNLFGGAGNDNLQVVEGSGQ 1280
WD40-rpts                                                                                      

Query     1281 FLFGGSNDDTLRSGGSNNRLYGGSGNDTLYANHNDFLSGGDGDDHLFTGNGGGNRLTGGAGADQFWIANAGLPTSKNIVT 1360
WD40-rpts                                                                                      

Query     1361 DFIPGVDLLGIGGIASATKFSDLTLSQVGSDTLLKVGSTELVSLLGVTSSTLTANNFTFA 1420
WD40-rpts                                                                  

1 WD40-repeats found in QUERY=gi_186687164_ref_YP_001870307.1_ (Len=1420):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     9-49       3.11  243.19  0.03240       27.5%     16.55

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-49     PGNLLVSRSVYTGTASTVTFPGTLPNGVASVADGTYPNVFS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTI-KVWD