Input parameters:

  Query = gi_186687055_ref_YP_001870198.1_ (Len=1403)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186687055_ref_YP_001870198.1_, Len=1403):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTKLANDTTNLQTKLANQYFDLDSSVQKVIQLLAIIYAPVDKNSLLSCLSKMGALDEKNKLWVTKTLSPQIDKLLKVGLL 80  
WD40-rpts                                                                                      

Query       81 VQSGRQSPECHPLLTEIATRHAVQTGQFEIQVIAVESKFPIRTHWNHDSRIFYSLRQCIREIRIGIYRQDLNFINKQIED 160 
WD40-rpts                                                                                      

Query      161 YQKYADSEEKLVIENIFEQIFNNPFDADGFNTLPQGLYESGISSIFLNCALKLSVSEDALMMLSEQCSTGGKHCSDYLHL 240 
WD40-rpts                                                                                      

Query      241 ILTEQLLLQGCTQEAQESLERVSNEYQNNAAIFWGWLSFLRGENEQAIKYYTDALKAIKKATGKRQIYFNTMGGLFFILA 320 
WD40-rpts                                                                                      

Query      321 LLKDGSAQRLKEAEEYTNLMSRQGDHWLRFIYGRLKTVLQVHQGDITQKQFVLSAHISSVEEENSLQTLFCSLCLYWMDA 400 
WD40-rpts                                                                                      

Query      401 EGAKKRLPKLLEPLYQRSFASGYHWLAMETAELLSRLKPSSKYQKEAEALREDSNIQTIVDLIRPQEAWEMCLNALANLQ 480 
WD40-rpts                                                                                      

Query      481 KQPQTSLKPESQLRLAWFITFYPSKCVLQPKEQKVNAKGEWSKGRPIALKRLSSGLAEFDYVTPQDMRVCSCIEVYSEGY 560 
WD40-rpts                                                                                      

Query      561 YGKVDYTFGEKAISALIGHPLVFWEDMPNIRVEIVKGEPELLVKKEKLGRLTLEFSPKLPESQNILHIKETPTRIKVIEI 640 
WD40-rpts                                                                                      

Query      641 TTEHRRIAQIIGKDNKLNVPAFAEKQVLAAINAVSGIVTVHSDIGGGSEGAEEVPAQTLPHIHLLPANVGLKITLLSRPF 720 
WD40-rpts                                                                                      

Query      721 TQGGPYFRPGTGGETVIAEIEGKRFQTRRNLSLEKQLAADAVAACPTLAQSEEQDGEWVIVDPESCLELLLELQALGNKV 800 
WD40-rpts                                                                                      

Query      801 VMAWPEGEKLHISHNADLKDFNLSIQRQQDWFAATGELKLNNDLVLDMQQLLELLEKTPSRFIPLGDGQFLALTQAFRKR 880 
WD40-rpts                                                                                      

Query      881 LDELRMFSEKHNKGIRFHPLATLGLEDFVDEVGKVKADKHWKTHREHLHEVKNLQPELPSTLQAELRDYQMEGFCWLARL 960 
WD40-rpts                                                                                      

Query      961 AHWGVGACLADQMGLGKTLQALAVILRNAHEGPTLIIAPTSVCMNWVSEAQKFAPTLNIIQFSGANRQKLLDGLQPLDML 1040
WD40-rpts                                                                                      

Query     1041 VCSYGLLQQEEVAQMLSVVHWQTIVLDEAQAIKNMTTKRSQAAMNLKSNFKLLTTGTPIENHLGELWNLFRFINPGLLGS 1120
WD40-rpts                                                                                      

Query     1121 FESFNQRFAVPIEKYQDKLARNKLKKLIQPFLLRRTKNQVLEELPSRTEILLHVELSREEKAFYEALRRQAISKLTESDA 1200
WD40-rpts                                                                                      

Query     1201 DAGKKHLQVLAEIMKLRRACCNPSLVMPDTVLPSSKLQLFGEVLGELLENRHKALVFSQFVDHLHIIRDYLEQQGINYQY 1280
WD40-rpts                                                                               (______

Query     1281 LDGSTSVAERKKRVDAFQAGSGDVFLISLKAGGTGLNLTAADYVIHTDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVAK 1360
WD40-rpts      ___________________WD 1_________________________)                               

Query     1361 DTIEEKIVQLHHQKRDLADSLLEGTDMSGKISTEALLQLISQG 1403
WD40-rpts                                                 

1 WD40-repeats found in QUERY=gi_186687055_ref_YP_001870198.1_ (Len=1403):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 22  1274-1329     3.49  259.01  0.01994       27.5%     26.36

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1274-1329   QGINYQYLDGSTSVAERKKRVDAFQAGSGDVFLISLKAGGTGLNLTAADYVIHTDP

   WD40 Template    TGECLRTLSGHTS----------------GVTSVSFSPDGKRLVSGSEDGTIKVWD