Input parameters:

  Query = gi_186687019_ref_YP_001870408.1_ (Len=223)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186687019_ref_YP_001870408.1_, Len=223):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARNYGAAKLKNHIHNNAPGTLGAMGRLFDVSESDFNKALLGDQTVITKIADMARLSDTAKANLPKALEVYRKIIETTGD 80  
WD40-rpts      (_______________________________________________________________________________

Query       81 INQAYAELVQLTQKHGTQTLKAINTSKTGEQRFKNEMTEMQAEHVNATTAEATRHAQRSSLIQISGATADLMAIAKYEAD 160 
WD40-rpts      ___________________WD 1_________________________________________________________

Query      161 LIKASNKVPEAQDAADRAYETAVTSALWTNGSEAKTDRIPKPNYSRTAGISRVGQWFRNFMGI 223 
WD40-rpts      ________________________________________)                      

1 WD40-repeats found in QUERY=gi_186687019_ref_YP_001870408.1_ (Len=223):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-201      3.13  243.97  0.03163       27.5%     -13.41

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-201    MARNYGAAKLKNHIHNNAPGTLGAMGRLFDVSESDFNKALLGDQTVITKIADMARLSDTAKANLPKALEVYRKIIETTGDINQAYAELVQLTQKHGTQTLKAINTSKTGEQRFKNEMTEMQAEHVNATTAEATRHAQRSSLIQISGATADLMAIAKYEADLIKASNKVPEAQDAADRAYETAVTSALWTNGSEAKTDRIPK

   WD40 Template    TGEC--------------LRTLS--GHTSGVT----------S------------VS-----FS--------------PD---------------GKR---------L------------------VS--------------------------------------------------------------GSEDGTIKVWD