Input parameters:

  Query = gi_186686821_ref_YP_001870014.1_ (Len=721)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186686821_ref_YP_001870014.1_, Len=721):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKRITSGILLTACLWSGLGMFSIRPQVTAVAQTQEDSNLFYLYNGQRISLNQRQDAIAVTFKKVSTRNPAAQPLYLQLQE 80  
WD40-rpts                                                                                      

Query       81 SLQGGVRGGSGAKVSPLGENYAVVNLPAGTLNALQQRIQQQPYVENTLPVLTRQQTKEVIVLPNEIIVSFDPKVDESQRQ 160 
WD40-rpts                                                                    (_________________

Query      161 TILQQSNLTIVRPLRFNRDRYLVKSKAAAGTQILNVANQLNNVKGISSAQPNFIQSITDQNLETASKQIANLKGTEDSVL 240 
WD40-rpts      _______________WD 1_______________________________)                             

Query      241 RKLLPSSQSPDPSPQSSRGISPKTSLLGLAWHLNSLPLQQCLPQLSSWELLQTCLQKSTVATKSPVSRTDIRVTEAWKRS 320 
WD40-rpts                                                                                      

Query      321 NGGRGVVVAVIDSLIQWDHPDLAGSLYTVKAADKCPDEVHGWDFSSGGNSLDPCEIGDGDTRISRTELAILTAKFQDTFK 400 
WD40-rpts                                                                                      

Query      401 LSDAELIRQYSVEALEMKQKYPNASFEEIAQILRYVFRTYKVGAEFHGTWVSGIIAAKPQDNQGLVGVAPNAQILPVRLF 480 
WD40-rpts                                                                                      

Query      481 GLNGSYSPSAYIEAIGYAADRGADIINLSLGSTLPTDGEEEAIADVLKAHPKLVIVAAAGNENSNRVAYPAAYPGVVAVG 560 
WD40-rpts                                                                                      

Query      561 ATNLLGNRAPYSNYGKGLAIVAPGGDLNTPGMLGGIPTTGGTWLDAFWQGMSAPESRWSTVLDARGKYWWVEGTSFASPA 640 
WD40-rpts                                                                                      

Query      641 VAGVVALMKGENKEISRQSLVSILKSTASYQGLAISDDDARRYRSQRRKGEVSSAVKGQPYFFGKGLVNANAAVKAVKEK 720 
WD40-rpts                                                                                      

Query      721 R 721 
WD40-rpts       

1 WD40-repeats found in QUERY=gi_186686821_ref_YP_001870014.1_ (Len=721):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   143-211      2.78  229.45  0.04920       15.0%      8.10

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  143-211    PNEIIVSFDPKVDESQRQTILQQSNLTIVRPLRFNRDRYLVKSKAAAGTQILNVANQLNNVKGISSAQP

   WD40 Template    TGECLRTLSGHTS--------------GVTSVSFSPDG----KRLVSG-----------SEDGTIKVWD