Input parameters:

  Query = gi_186686240_ref_YP_001869436.1_ (Len=389)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186686240_ref_YP_001869436.1_, Len=389):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKYRLFGVISAVCITLSILYSFVGNSQTPTSRVLLFTNPPLERILPFEAEAEKPQSPVTLTLQAVDAAGKHLENTKISL 80  
WD40-rpts                                                                                      

Query       81 QILTPPRNPWLTTDFPIVEGTKLLQMNANAPDGKLEIQQMLPIRGNYQLMVNVSPLVTNTFAPYQQTLNLNVHENPIKYK 160 
WD40-rpts                                               (__________________________WD 1________

Query      161 YFVVIAAILLSLGLLGGWVIGGQEELQQGEIAPQSVRLLLSALTVVAIVTLLVINISAEVAEAHGSEHHPSSTEVIAPSS 240 
WD40-rpts      __________________)                                                             

Query      241 QKSQGLEISLNGDKNATVGKLANLALQLKDTASGQPIADVALEVKAIATEHNLTIFDYKGIPDEQGKLTWQEQFFDGSPH 320 
WD40-rpts                                                                                      

Query      321 KIEVEATPLPGSNRQFAPVKVAQEVEVKAIAPPIYIRLIGLFYFTAFVGIGMAIGLLIQHRRTPQARGN 389 
WD40-rpts                                                                           

1 WD40-repeats found in QUERY=gi_186686240_ref_YP_001869436.1_ (Len=389):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   122-179      2.89  233.94  0.04294       20.0%     12.61

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  122-179    PIRGNYQLMVNVSPLVTNTFAPYQQTLNLNVHENPIKYKYFVVIAAILLSLGLLGGWV

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIK------------------VWD