Input parameters:

  Query = gi_186686202_ref_YP_001869398.1_ (Len=374)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186686202_ref_YP_001869398.1_, Len=374):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYLKTLNLRQFRNYQDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMTRDRDLVQEGEAIAQINATLERQTGV 80  
WD40-rpts                                                                                      

Query       81 SDLTLTLRRNGRRSVALNGESIRRQMDFLGVLNAVQFSSLDLDLVRGGPEGRRNWLDTLLIQLEPVYAHILQQYNHVLRQ 160 
WD40-rpts               (_______________________________________WD 1___________________________

Query      161 RNAFLKRHVETLDATSLHSELAVWDAQLATTGTRVIRRRDRAIQRLAPIASAWHASISGSTEALQIKYLPNIPSEDNHPE 240 
WD40-rpts      ____________)                                                                   

Query      241 EVQQAFLVKIQQRAIAELHQGTTLVGPHRDEIELTINQTPARQYGSQGQQRTLVLALKLAELQLIEEVVKEPPLLLLDDV 320 
WD40-rpts                                                                                      

Query      321 LAELDLSRQNQLLDAIQDRFQTLITTTHLGSFDSQWLKSSQILFVKAGEIIPNL 374 
WD40-rpts                                                            

1 WD40-repeats found in QUERY=gi_186686202_ref_YP_001869398.1_ (Len=374):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    90-173      3.02  239.48  0.03627       25.0%     22.16

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   90-173    NGRRSVALNGESIRRQMDFLGVLNAVQFSSLDLDLVRGGPEGRRNWLDTLLIQLEPVYAHILQQYNHVLRQRNAFLKRHVETLD

   WD40 Template    TGECLRTLSGHTSGV--------TSVSFSPDGKRLVSGSED-------------G-----------------------TIKVWD