Input parameters:

  Query = gi_186686080_ref_YP_001869276.1_ (Len=1403)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186686080_ref_YP_001869276.1_, Len=1403):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MINLATDTTKLQIQLADKYFKLHPSIQKIIQLFSVIYAPIDKNSFVSCLSKIDALDENNKPWVTKTLSSQIDKLLKAGLL 80  
WD40-rpts                                                                                      

Query       81 IQESRQGAECHPLLTEIATRHAVQTGQFETLVTAVEEKLPIRTHWNRDSRIFYNLRQCIREIRIGIYRQDLSFINQQIEA 160 
WD40-rpts                                                                                      

Query      161 YQKYSDSEEKIVIEDIFEQIYNNPFDADWFNTLPQGLYESGISSILFNSALKLSASEDALMLLEEECSTPGKHCSDYLHL 240 
WD40-rpts                                                                                      

Query      241 ILTEQLLLQGCTQEAQESLGRISNEYQNNAAIFWGWLSFLRGDNEQAIKYYKDALKAIKKATGKRQIYFNTIGGLFFILA 320 
WD40-rpts                                                                                      

Query      321 LLKDGSAQSLREAEEYTSLMSRQSDHWLRFTYGRLKMVLQVHQGDITQKQFVVSGHISSVEEENSLQTLFCSLCLYWMDA 400 
WD40-rpts                                                                                      

Query      401 ESAKKRLLNLLEPLYRRSLASGYHWLAMETAELLSRLKPSSNYKQLAEALREDSNIQTIVDLIRPQEAWEMCLNALANLQ 480 
WD40-rpts                                                                                      

Query      481 KEPQTPGKPESELRLAWFITFYPSRCVLQPREQKVNAKGEWSKGRPIALKRLSSALSEFDYITPQDMRVCSCIEAYSDGY 560 
WD40-rpts                                                                                      

Query      561 YGKVDYTFGEKAISALIGHPLVFWEDTLTIRVEIVKGEPELLVKKEKLGRLTLEFSPKLPESQNILHIKETPTRIKVIEI 640 
WD40-rpts                                                                                      

Query      641 TAEHRRIAEIIGIDNKLNVPAIAEKQVLAAINAVSGIVTVHSDIGGGSEGAEKVPAQTLPHIHLLPANAGLKISLLSRPF 720 
WD40-rpts                                                                                      

Query      721 AQGGPYYRPGAGGETVIAEIDGKRLQTRRNLSEEKQLAKDAVAACATLTRTEEQDGEWIIEHLEDCLELLLELQELGNNV 800 
WD40-rpts                                                                                      

Query      801 VIEWPQGEKLRVSHNADLKDFNLSIQRQQDWFAATGELKLNNDLVLDMQQLLELLEKTPSRFIPLGDGQFLALTQAFRKR 880 
WD40-rpts                                                                                      

Query      881 LDELRMFSEKHSKGIRFHPLATLGLEDFVDEVGKVKADKHWKTHIQRLHEVKNLQPELPSTLQAELRDYQMEGFCWLARL 960 
WD40-rpts                                                                                      

Query      961 AHWGVGACLADQMGLGKTLQALAVILRNAHEGPTLIIAPTSVCMNWVSEAQKFAPTLNIIQFSGANRQKLLDGLQPLDML 1040
WD40-rpts                                                                                      

Query     1041 VCSYGLLQQEEVAQMLSQIQWQTIVLDEAQAIKNMTTKRSQAAMNLKSNFKLLTTGTPIENHLGELWNLFRFINPGLLGS 1120
WD40-rpts                                                                                      

Query     1121 FESFNQRFATPIEKYQDKLARNKLKKLIQPFLLRRTKNQVLEELPSRTEILLHVELSQEEKAFYEALRRQAISKLTESDA 1200
WD40-rpts                                                                                      

Query     1201 EAGKKHLQVLAEIMKLRRACCNPSLVMPGTELPSSKLQLFGEVLGELLENRHKALVFSQFVDHLHIIRDYLEQQGINYQY 1280
WD40-rpts                                                                               (______

Query     1281 LDGSTSVAERKKRVDAFQAGSGDVFLISLKAGGTGLNLTAADYVIHTDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVAK 1360
WD40-rpts      ___________________WD 1_________________________)                               

Query     1361 DTIEEKIVELHHHKRDLADSLLEGTEMSGKISTEALLQLISES 1403
WD40-rpts                                                 

1 WD40-repeats found in QUERY=gi_186686080_ref_YP_001869276.1_ (Len=1403):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 21  1274-1329     3.51  259.73  0.01951       27.5%     26.47

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1274-1329   QGINYQYLDGSTSVAERKKRVDAFQAGSGDVFLISLKAGGTGLNLTAADYVIHTDP

   WD40 Template    TGECLRTLSGHTS----------------GVTSVSFSPDGKRLVSGSEDGTIKVWD