Input parameters:

  Query = gi_186685888_ref_YP_001869084.1_ (Len=1084)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186685888_ref_YP_001869084.1_, Len=1084):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQQANNNGNGGFSLSAIAIRQHIGTLMLTVAVIVIGVFFLTTIQVDLLPSITYPRIGVRLEAPGISPEVAVDEITRPLEE 80  
WD40-rpts                                                                                      

Query       81 ALSATENVVQVFSRTREGQVSLDLYFQPGGDIDQALNDATAAFNRGRGQLPDTIEEPRLFKVDPSQLPVYELALTSASLQ 160 
WD40-rpts                                                                                      

Query      161 GKDLRVFADEELTRELSVVPGVASVDVSGGAEEEVRVLVDLNRLQALGVGLNDVLDELTARNQDTSGGRILGQNSEPLTR 240 
WD40-rpts                                                                                      

Query      241 TVGRFQNAREIENLSLEVSSPTSPAPSRRVYLRDFAEVIDDTEEQRVFVYLNRQPAVKFSIQKQPEANTITVVDAVKRRI 320 
WD40-rpts                                              (_______________________________________

Query      321 EQLRQSGLIPADMTLSPTTDESVFIRNSLNDVIFSGISGALLAAAAVLLFLGSFRQTLIISLTIPLCTLAAIALMKIFGL 400 
WD40-rpts      ____________________________WD 1________________________________________________

Query      401 TLNVFSLAGLTLGVGQAIDTSVVILENISEKTGMTPNQKEMEAEGQKKNSRFFIDSAIAASQEVESALVAATGANLVSVV 480 
WD40-rpts      __________________)                                                             

Query      481 PFLLIGGFIALLFNELILTISFAVAASLVVAITVVPMLSSRLLGIRWSSRISEFWLLRQFNHRFEDATRGYSNFLTKVLR 560 
WD40-rpts                                                                                      

Query      561 YRLFVVTAALVILGGSSFFMFGQIPQEILPRISTGQANLRAQFPPGTPLATSEKVMQIVDDILLKQPETQSAFTTVGGSL 640 
WD40-rpts                                                                                      

Query      641 FGSNTTENPLRASSTINLKPGTDVEAFVKKVTQEFNKLNLAGILLRLNPGQVRGLILSNSPVQGSEVDVILQGENEENLT 720 
WD40-rpts                                                                                      

Query      721 QAGAQVLQALQERAKLATFRPDADPRQPEIQIRPDWERVSALGLSAQQIGATVQTAIEGSVPTQIQRGNRLVDVRVQLNK 800 
WD40-rpts                                                                                      

Query      801 EAIARPSQLEQLPLFTENNQLIRLSDVANIQEGQAPGEVQRINQRQAFIVAGNLSEGASLGEAIAEVNEVLKDVDLPDGV 880 
WD40-rpts                                                                                      

Query      881 SIVPSSAQETNQQLQDALKTLGALATFLIFVVMAVQYNSLIDPLVIMFTVPLALAGGIFGLYITQTAIGATVIVGVVLLV 960 
WD40-rpts                                                                                      

Query      961 GIVVNAGILMVELANQIRDEIGCTRQIAIVKAAPQRLRPIIMTTVTTILGLFPLALGIGEGSEFLQPLGIVVFFGMAIAT 1040
WD40-rpts                                                                                      

Query     1041 MLTLFIIPCFYILLHDLLDGNWAKPVLIRLRGFTKKLISITDRD 1084
WD40-rpts                                                  

1 WD40-repeats found in QUERY=gi_186685888_ref_YP_001869084.1_ (Len=1084):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   281-419      2.82  231.26  0.04657       20.0%     37.01

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  281-419    DTEEQRVFVYLNRQPAVKFSIQKQPEANTITVVDAVKRRIEQLRQSGLIPADMTLSPTTDESVFIRNSLNDVIFSGISGALLAAAAVLLFLGSFRQTLIISLTIPLCTLAAIALMKIFGLTLNVFSLAGLTLGVGQAID

   WD40 Template    TGECLR---TLSGHTSGVTSVSFSPDGK------------------------RLVSGSEDGT-------------------------------IK-----------------------------------------VWD