Input parameters:

  Query = gi_186685764_ref_YP_001868960.1_ (Len=373)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186685764_ref_YP_001868960.1_, Len=373):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTVVSNDHRFQPINLFEYEKLAKEHLSQMTLDYYSSGAWDEITLRDNRAAFERVKLRPRILVDVSDRNLTTSILGQPLQL 80  
WD40-rpts                                                                                      

Query       81 PLLIAPMAFQCLAHPDGEVATALAAASAGVGMVLSTMATKSIEEVATACDKFPESLRWFQLYIHKDKGLTRALVEKAYKA 160 
WD40-rpts                                                                                      

Query      161 GYKALCLTVDAPVLGQRERDRRNEFALPTDLHLANLATISGLDISHEKGESGLFTYFAQQLNPAVTWDDLEWLQSLSPLP 240 
WD40-rpts                                                                                 (____

Query      241 LVIKGVLRGDDAVRAVEYGAKAIVVSNHGGRQLDGAIASLDALVEIVAAVDGKIEVLLDGGIRRGTDILKALALGAKAVL 320 
WD40-rpts      _________________________________WD 1_____________________________________)     

Query      321 IGRPILWGLAVAGQVGVSHVISLLQGELNVGMALSGCAKLQDINLSLLTLPRF 373 
WD40-rpts                                                           

1 WD40-repeats found in QUERY=gi_186685764_ref_YP_001868960.1_ (Len=373):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   236-315      3.61  263.91  0.01716       22.5%      8.16

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  236-315    LSPLPLVIKGVLRGDDAVRAVEYGAKAIVVSNHGGRQLDGAIASLDALVEIVAAVDGKIEVLLDGGIRRGTDILKALALG

   WD40 Template    TGECLRTLSGHTS----------GVTSVSFSPDGKRLVSGS---------------------EDGTIKVW---------D