Input parameters:

  Query = gi_186685757_ref_YP_001868953.1_ (Len=471)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186685757_ref_YP_001868953.1_, Len=471):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTLPDLDYVYKQQSQQNQELNLSADDYSLLTDLYQLTMAACYTGEGIEQRRASFELSVRRLPEGFGYLIAMGLTQALEY 80  
WD40-rpts                                                                                      

Query       81 LAKIRFSSAQIAALQATGIFAHAGDRFWSLLAEGKFTGDVWAVPEGTAVFANQPLLRVEAPLWQAQLVETYLLNTINYQT 160 
WD40-rpts                                                                                      

Query      161 LIATKAARLRDIAGESATLLEFGTRRAFSPQGSLWAARAALAGGLDSTSNVLAALQLGQQPSGTMAHALVMALSAIEGTE 240 
WD40-rpts                                                                                      

Query      241 EQAFSAFHRYFPGAPLLIDTYDTIAAAGRLAEKVNSGEMQLTGVRLDSGDLVTLSKQVRSLLPGVPIFASGDLDEWEIAR 320 
WD40-rpts                (______________________________________WD 1___________________________

Query      321 LKAAGAEIDGYGLGTRLVTGSPVNGVYKLVDIDGIPVMKQSSGKVTYPGRKQIFRSYTGGKVKADRLGLLGESSQEEEPL 400 
WD40-rpts      ___________)                                                                    

Query      401 LQLVVQEGQRVQPLESLATIRQRTAVSVASLPQQTRLLDHPVAVEVEISEALRVLTEETKKRTAEALSTQR 471 
WD40-rpts                                                                             

1 WD40-repeats found in QUERY=gi_186685757_ref_YP_001868953.1_ (Len=471):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   251-332      2.77  228.97  0.04991       20.0%     22.42

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  251-332    FPGAPLLIDTYDTIAAAGRLAEKVNSGEMQLTGVRLDSGDLVTLSKQVRSLLPGVPIFASGDLDEWEIARLKAAGAEIDGYG

   WD40 Template    TGECLRTLSGHT-------------------SGVTSVSFS------------PDGKRLVSGSED-----------GTIKVWD