Input parameters:

  Query = gi_186685658_ref_YP_001868854.1_ (Len=499)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186685658_ref_YP_001868854.1_, Len=499):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSETPLLDQIIKNVRVVRPHEDVIELLDLGIKDGKFAQIASNISPDTGKQVFDGKNLLGFPGVVDAHMHVGIYRPLDKDA 80  
WD40-rpts                                                                                      

Query       81 LTESKAAATGGVTTSLNYIRTGQYYLNKGGSYRDFLPEVLALSAGNFFVDYAYHIAPIASQHIDEIPLLFEEHGISSFKI 160 
WD40-rpts                                                                                      

Query      161 FMFYGGYGLHGLSDQQNLFLMINKEERYDFAHFEFIMRGLTRLMEKHPEARDSISLSLHCEVAEILNAYTKIVENDSSLS 240 
WD40-rpts                                                                                      

Query      241 GLHAYSAARPPHSEGLAICIASYLANETNCANINLLHLSSRKAMEAALTMQTAFPHINFRREVTVGHLLLDVDTPNGIWA 320 
WD40-rpts                                                                                      

Query      321 KVNPPIRPRADVEYLWQAVLNNQVDWIVSDHACCSAEQKRSAKDPNNIWLAKSGFGGTEYLLSGVFSEGSKRGMSYNQMA 400 
WD40-rpts                          (___________________________________________WD 1____________

Query      401 KLLSWNPSRRFGLLKKGDIAIGYDADLVLVDPNETFVVCAAKSESQQGYTPFEGVELSGRVKNTFLRGNLIYNNGQVLGS 480 
WD40-rpts      ______________________________)                                                 

Query      481 PIGRYLKRHSSNPHGNLTA 499 
WD40-rpts                         

1 WD40-repeats found in QUERY=gi_186685658_ref_YP_001868854.1_ (Len=499):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   341-431      3.47  258.10  0.02051       12.5%     13.21

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  341-431    NNQVDWIVSDHACCSAEQKRSAKDPNNIWLAKSGFGGTEYLLSGVFSEGSKRGMSYNQMAKLLSWNPSRRFGLLKKGDIAIGYDADLVLVD

   WD40 Template    TGECLRTLSGHTSGV----------TSVSFSPDGKR-----------------LV------------------------SGSEDGTIKVWD