Input parameters:

  Query = gi_186685652_ref_YP_001868848.1_ (Len=410)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186685652_ref_YP_001868848.1_, Len=410):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNVQASFEATEAEFRVEGYEKIEFSLVYVNGAFDISNREIADSYEKFGRCLTVIDANVNRLYGKQIKSYFRHYGIDLTV 80  
WD40-rpts                                                                               (______

Query       81 VPIVITEPTKTLATFEKIVDAFSDFGLIRKEPVLVVGGGLTTDVAGFACAAYRRKSNYIRVPTTLIGLIDAGVAIKVAVN 160 
WD40-rpts      __________________________WD 1________________________________)                 

Query      161 HRKLKNRLGAYHAPLKVILDFSFLQTLPTAQVRNGMAELVKIAVVANSEVFELLYEYGEELLSTHFGYVNGTKELKAIAH 240 
WD40-rpts                                                                                      

Query      241 KLNYEAIKTMLELETPNLHELDLDRVIAYGHTWSPTLELAPMIPLFHGHAVNIDMALSATIAARRGYITSGERDRILSLM 320 
WD40-rpts                                                                                      

Query      321 SRIGLSIDHPLLDGDLLWYATQSISLTRDGKQRAAMPKPIGECFFVNDFTREELDAALAEHKRLCATYPRGGDGIDAYIE 400 
WD40-rpts                                                                                      

Query      401 TQEESKLLGV 410 
WD40-rpts                

1 WD40-repeats found in QUERY=gi_186685652_ref_YP_001868848.1_ (Len=410):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    74-143      3.15  244.79  0.03084       22.5%     12.68

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   74-143    YGIDLTVVPIVITEPTKTLATFEKIVDAFSDFGLIRKEPVLVVGGGLTTDVAGFACAAYRRKSNYIRVPT

   WD40 Template    TGECLRTLSGHTSGVTSV--------------SFSPDGKRLVSGSE---D-------------GTIKVWD