Input parameters:

  Query = gi_186685479_ref_YP_001868675.1_ (Len=719)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186685479_ref_YP_001868675.1_, Len=719):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLNIPQLLATEINLKPHQVQNALELLAEGATIPFIARYRKERTDEMNEVQLRELSDRYTYLTELEERKSVIVSAIAQQGK 80  
WD40-rpts                                                                                      

Query       81 LTDELKAKISSCLQKTELEDLYLPYRPKRRTRATIAREKGLEALAEFIKSLNVKNTAIASLEEETAKYISEAKGVKTAEE 160 
WD40-rpts                                                                                      

Query      161 ALKGAADILAEEVAEKAELRAYIRDYLLEEGVFVSRIKDDYPEGTTKFEMYRNYKIRVKNIAPHNMLALCRGETEKVLSF 240 
WD40-rpts                                                                            (_________

Query      241 EIAFDEDTVLYYLESKEIKTKVRAIRDFYQAMLKDAFNRLMKVSLMGEVISEKKVYADMESIKTFETNLRELLLSAPAGM 320 
WD40-rpts      ___________________________________________WD 1_________________________________

Query      321 KPTLAIDPGFRTGCKVAVLDQTGKFLEYQAVFPHQAAEQRAKAAQTVKNLIEKYKIELIAIGNGTASRETEEFVTQVLQT 400 
WD40-rpts      ___________________)                                                            

Query      401 IERKPVKVMVNESGASIYSASIVALEEFPDLDVTVRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVDQKLLKKKLDD 480 
WD40-rpts                                                                                      

Query      481 TVESCVNYVGVDLNTASKELLTSVSGITATVANNIVAYRNQNGAFKNRRQLLKVPKLGPKAFEQAAGFLRIRGGDNPLDN 560 
WD40-rpts                                                                                      

Query      561 TAVHPESYSVVEAIASDLNVPLNQVTQIAEKLKKTNLKKYVTDSVGEPTLRDILSELEKPGRDPRAEFKYATFKEGIKEI 640 
WD40-rpts                                                                                      

Query      641 RDLNVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPNKIVKVGQVVKVQVLEINEKLKRISLSMKAVKQ 719 
WD40-rpts                                                                                     

1 WD40-repeats found in QUERY=gi_186685479_ref_YP_001868675.1_ (Len=719):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   231-340      2.84  232.06  0.04545       27.5%     11.26

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  231-340    RGETEKVLSFEIAFDEDTVLYYLESKEIKTKVRAIRDFYQAMLKDAFNRLMKVSLMGEVISEKKVYADMESIKTFETNLRELLLSAPAGMKPTLAIDPGFRTGCKVAVLD

   WD40 Template    TGECLRTLSGHTSGV--------------TSVS---------------------------------------------------FSPDGKRLVSGSEDG-----TIKVWD