Input parameters:

  Query = gi_186685417_ref_YP_001868613.1_ (Len=439)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186685417_ref_YP_001868613.1_, Len=439):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSPQILLIRRACIVLPNGEMMIGDVLTRDRQIVEVAPEISQTAVVTEIDAEGLTLLPGVIDPQVHFREPGLEHKEDLFT 80  
WD40-rpts                                   (_________________WD 1_________________)           

Query       81 ASCACAKGGVTSFLEMPNTRPLTTTQQALDDKLERASQKSLVNYGFFIGATAENLPDLLLAKPTPGIKIFMGSMHGQLLV 160 
WD40-rpts                                                                                      

Query      161 DGETTLETIFAKGDRLIAVHAEDQARINQRRQEFANIHDPAVHSQIQDNQAALLATQLVLKLSQKYHRRLHILHMSTAEE 240 
WD40-rpts                                                                                      

Query      241 ADLLRQEKPSWVTAEVTPQHLVLNTSAYEKIGTLAQMNPPLRSPHDNEVLWQALRDGVIDFIATDHAPHTLEEKAQEYPN 320 
WD40-rpts                                                                                      

Query      321 SPSGMPGVETSLALMLTAAMEGKCTVSQVVNWMSKNVAVAYGIPNKGVIAPGYDADLVLVDLNTYRPVRREELLTKCHWS 400 
WD40-rpts                                                                                      

Query      401 PFEGWNLTGWATTTIVGGEIVYDKGQVNTQVRGQALTFL 439 
WD40-rpts                                             

1 WD40-repeats found in QUERY=gi_186685417_ref_YP_001868613.1_ (Len=439):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    30-69       2.92  235.46  0.04100       10.0%     16.76

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-69     DRQIVEVAPEISQTAVVTEIDAEGLTLLPGVIDPQVHFRE

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD