Input parameters:

  Query = gi_186685239_ref_YP_001868435.1_ (Len=468)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186685239_ref_YP_001868435.1_, Len=468):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRVCVIGTGYVGLVTGACLAHIGHDVICVDNNEEKVKLMKSGQSPIFEPGLSEIMQSAIQTQKIHFTSDLAAGVSHGEIL 80  
WD40-rpts                                                                                      

Query       81 FIAVGTPPLPTGESDTRYVEAVARGIGENLNGGYKVIVNKSTVPIGSGDWVRMLVLDGIVERQKTLVPAGGVPSDEKLSE 160 
WD40-rpts                                                                                      

Query      161 FAAEFDVVSNPEFLREGSAVHDTFNPDRIVLGGNSQRAVALMEQLYDPIVQRKYAEDQSLPPVPILATDLSSAEMIKYAA 240 
WD40-rpts                                                                                      

Query      241 NAFLATKISFINEVANICDRVGADVTQVAKGIGLDSRIGNKFLQAGIGWGGSCFPKDVSALIHTADDYGYEAQLLKSAVS 320 
WD40-rpts                                                                                      

Query      321 VNERQRLIALEKLQQVLKILKGKTVGLLGLTFKPDTDDLRDAPALILIEQLNRLGAKVKAYDPIISQTGMRHGLSGVLVE 400 
WD40-rpts                      (____________________WD 1____________________)                  

Query      401 TDAERLADGCDALVLVTEWQQFSTLDYLKMAKLMAHPVIIDGRNFLDPETLIRAGFQYVGVGRQRVRS 468 
WD40-rpts                                                                          

1 WD40-repeats found in QUERY=gi_186685239_ref_YP_001868435.1_ (Len=468):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   337-382      3.00  238.48  0.03739       27.5%      4.27

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  337-382    LKILKGKTVGLLGLTFKPDTDDLRDAPALILIEQLNRLGAKVKAYD

   WD40 Template    LRTLSGHTSGVTSVSFSPDGKRLVSGS----------EDGTIKVWD