Input parameters:

  Query = gi_186685067_ref_YP_001868263.1_ (Len=288)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186685067_ref_YP_001868263.1_, Len=288):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVAFLGTGLMGLPMAQRLLAADIQLVAYNRTPEKLAPLQAAGAEIATHPRHAIRAAECVILMLTNAPAIYNVLLSDTAW 80  
WD40-rpts                                                             (________________________

Query       81 QTLEGRTIIQMGTITPTESQEIRDAIVGGGGEYLEAPVLGSIPEAQAGKLSVMVGAEPEQYQRHLKLLQNFGTEPLLIGP 160 
WD40-rpts      _____________WD 1____________________________________)                          

Query      161 VGSAAALKLALNQLIASLTTSFALSLAFVQRQGVDVDMFMQILRDSPLYAPTFDKKLQRMLDGNYAEPNFPTKHLLKDTE 240 
WD40-rpts                                                                                      

Query      241 LFISEAKSRSLDLSSIKGVRQILQTAVKMSFADDDYSSLFSVIKEWGE 288 
WD40-rpts                                                      

1 WD40-repeats found in QUERY=gi_186685067_ref_YP_001868263.1_ (Len=288):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    56-134      3.15  244.66  0.03097       22.5%     22.22

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   56-134    AAECVILMLTNAPAIYNVLLSDTAWQTLEGRTIIQMGTITPTESQEIRDAIVGGGGEYLEAPVLGSIPEAQAGKLSVMV

   WD40 Template    TGECLRTLSGH----------------TSGVTSVSFSPDG-------------------KRLVSGS----EDGTIKVWD