Input parameters:

  Query = gi_186684877_ref_YP_001868073.1_ (Len=575)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186684877_ref_YP_001868073.1_, Len=575):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIMNVAPAIVVLGQNSVTVARKIISVLPGATLYGLAGRTSGVDVSFTNFGDTLRELFAQGTPLIGICAAGILIRTLAPIL 80  
WD40-rpts                                                                                      

Query       81 SDKQQEPPVLAVAEDGSAVVPLLGGLGGVNDLARRIAEALDVKPAITTTGDLRLGTTLLSPPPAYRLANPDDAKKFISDV 160 
WD40-rpts                                                                                      

Query      161 LAGAEVRLEGIAPWLSDSKLPIDPNGDLTIQVTERLVTPIANCLVYHPATIAIAINGIIDDAVALVHQLLADAALEKTSV 240 
WD40-rpts                                                                                      

Query      241 AGIFAPITAAANPAVNAVANALGVPARFFTPNQLESLLSQGYSPAQAAAIAATGTSLLSSSSPDVAIAIAPQPIDPDTIG 320 
WD40-rpts                                                                                      

Query      321 QPRGRLAIIGTGPGGAQWMSPEVKEILKSATDLVGYKTYLDLIGSLADGKQRHESDNREEEARAKMALDLAASGRYVAVV 400 
WD40-rpts                                                                              (_______

Query      401 SSGDPGIYAMATAVFEVCDRYAKPEWDTIDIHVAPGISAMQAAAAAIGAPLGHDFCAISLSDILKPWSAIEQRIAAAAEA 480 
WD40-rpts      _________________________________WD 1________________________________________)  

Query      481 DFVIAFYNPVSKERTWQLAEARNILLRHRTPDTPVVLARNLGRPGQTVKAIALDQLTPASADMRTIILVGSTKTRTIKRS 560 
WD40-rpts                                                                                      

Query      561 DGNLWVYTPRRYTQE 575 
WD40-rpts                     

1 WD40-repeats found in QUERY=gi_186684877_ref_YP_001868073.1_ (Len=575):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   393-478      2.81  230.79  0.04723       17.5%     23.96

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  393-478    SGRYVAVVSSGDPGIYAMATAVFEVCDRYAKPEWDTIDIHVAPGISAMQAAAAAIGAPLGHDFCAISLSDILKPWSAIEQRIAAAA

   WD40 Template    TGECLRTLSGHT----SG-----------------VTSVSFSPD---------------GKRLVSGSEDGTIKVWD----------