Input parameters:

  Query = gi_186684741_ref_YP_001867937.1_ (Len=533)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186684741_ref_YP_001867937.1_, Len=533):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQRQEKISQVIVTAGQMRDIEDRIFAAGMPVVALMEKVAGLVARRIQEIPQIPCKKAGYVASNSLLKKGLPQAVGSRVGI 80  
WD40-rpts                                                                                      

Query       81 LVGPGHNGGDALVVARELHFRGYEVWIYSPFSKFKELTSQHLQYAQSLGIPIYQTIEQLPDSDLLVDGLFGFGLEKNLTD 160 
WD40-rpts                                                                                      

Query      161 PIASAINQLNELSVPIYSIDLPSGLHTDTGVVLGTAIRATHTFCLGLWKLAFFQDPALEYVGKAELIDFDIPLADVEAVL 240 
WD40-rpts                                                                                      

Query      241 KDAPSIKRITPTTALATLPLPRPPVTHKYKEGHLLLICGSRRYAGGAILTGLGARASGVGMLSIAVPESLKSLLVSHLPE 320 
WD40-rpts                                                                                      

Query      321 ALIIGCPETESGAIAQLQLPEKTDLTSFNAIACGPGLTRDATPIVQEVIESERPLILDADGLNILAQMGAIATLKKRLAV 400 
WD40-rpts                                                                                 (____

Query      401 TVLTPHAGEFQRLFPDIADAKHDRVKAAQEAALQSGAVVLLKGARTAIANPQGAIWMITESTPALARGGSGDVLTGLLGG 480 
WD40-rpts      _________________________WD 1_____________________________)                     

Query      481 LLAQAATKQISVEDIVATAAWWHSQAGILAAQERTELGVDAFTLTQYLLKVLS 533 
WD40-rpts                                                           

1 WD40-repeats found in QUERY=gi_186684741_ref_YP_001867937.1_ (Len=533):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   396-459      3.24  248.65  0.02741       15.0%     23.47

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  396-459    KRLAVTVLTPHAGEFQRLFPDIADAKHDRVKAAQEAALQSGAVVLLKGARTAIANPQGAIWMIT

   WD40 Template    TGECLRTLSGH-------TSGV-----------------TSVSFSPDGKRLVSGSEDGTIKVWD