Input parameters:

  Query = gi_186684737_ref_YP_001867933.1_ (Len=455)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186684737_ref_YP_001867933.1_, Len=455):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAIATINPATGETLKTFEALNDTEILAKLDLANQAFEKYRQTDFSERSQWLQKAADILEQDKAEFAKLMTLEMGKPFKAA 80  
WD40-rpts                                                                                      

Query       81 IAEVEKCAVVCRYYAEHAPSFLADVSVKTDASQSFVRYQPMGAILAVMPWNFPFWQVFRFAAPALMAGNVGLLKHASNVP 160 
WD40-rpts                                                                                      

Query      161 QCALAIEDIIRRAGFPEGAFQTLLIGAAKVADLMADDRVKAATLTGSEPAGISLAVAAGKQIKKTVLELGGSDPFIVLES 240 
WD40-rpts                  (____________________________________________WD 1___________________

Query      241 ADLETAVVTATTARMLNNGQSCIAAKRFIVAEAIADKFEKLLLEKFEALKVGDPMQSDTDLGPLATPGILQDLDQQVQAA 320 
WD40-rpts      ________________________)                                                       

Query      321 TKIGGKVLTGGHPLSDRPGNFYPPTIIIDIPPDTPIAKEEFFGPVALLFRVPDIDAAIKLANDSPFGLGASAWTKNDQEC 400 
WD40-rpts                                                                                      

Query      401 DRLIEEIEAGAVFINSMVKSDPRLPFGGTKRSGYGRELSIQGIHEFVNVKTVWVK 455 
WD40-rpts                                                             

1 WD40-repeats found in QUERY=gi_186684737_ref_YP_001867933.1_ (Len=455):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   173-265      2.89  234.10  0.04273       17.5%     15.99

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  173-265    AGFPEGAFQTLLIGAAKVADLMADDRVKAATLTGSEPAGISLAVAAGKQIKKTVLELGGSDPFIVLESADLETAVVTATTARMLNNGQSCIAA

   WD40 Template    TGECLRTLSGHTSG------------VTSVSFSPD-------------------------GKRLVSGSED----------------GTIKVWD