Input parameters:

  Query = gi_186684666_ref_YP_001867862.1_ (Len=416)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186684666_ref_YP_001867862.1_, Len=416):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTDHTRKRVVVTGVGAITPIGNTATEYWDGLLSGRNGIDYITFFDASSHDCRIAGEVKNFDPHDYLERKDAKRMDRFAQF 80  
WD40-rpts                                                                                      

Query       81 GVSAAKQAIANAQLVINELNAEQVGVMIGSGVGGIKVLEDQQTIYLNRGPDRCSPFMIPMMIANMAAGLTAIHTGAKGPN 160 
WD40-rpts                                                                                      

Query      161 SCPVTACAAGSNAVGDAFRLIQGGYAKAMICGGTEAAVTPLSMAGFAACKALSFRNDDPAHACRPFDRDRNGFILGEGSG 240 
WD40-rpts                            (_______________________WD 1_______________________)      

Query      241 ILILEELQHALSRGAHIYAEMIGYGMTCDAYHITSPVPGGLGAARAIELALKDASITPEQISYINAHGTSTPANDSTETS 320 
WD40-rpts                                                                                      

Query      321 AIKKALGEHAYKVAISSTKSMTGHLLGGSGGIEAVATVLAIANDQIPPTINLENPDPECDLDYVPNYSRVQKVEVAISNS 400 
WD40-rpts                                                                                      

Query      401 FGFGGHNVTLAFKKYV 416 
WD40-rpts                      

1 WD40-repeats found in QUERY=gi_186684666_ref_YP_001867862.1_ (Len=416):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   183-234      2.87  233.12  0.04402       17.5%     -2.11

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  183-234    GGYAKAMICGGTEAAVTPLSMAGFAACKALSFRNDDPAHACRPFDRDRNGFI

   WD40 Template    TGECLRTLSGHTSGVTS------------VSFSPDGKRLVSGSEDGTIKVWD