Input parameters:

  Query = gi_186684257_ref_YP_001867453.1_ (Len=1236)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186684257_ref_YP_001867453.1_, Len=1236):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQLRDGDKNHIMNKTFATIDGNEAVARVAYKLNEVIAIYPITPSSAMGEWADAWSAEGRPNLWGTIPSVVQMQSEGGAAG 80  
WD40-rpts                                                                                      

Query       81 AVHGALQTGSLSTTFTASQGLLLMIPNFYKIAGELTSAVVHVAARSLATHALSIFGDHSDVMAARATGFALLCSASVQES 160 
WD40-rpts             (_______________________________WD 1______________________________)      

Query      161 QDFALIAHAATLETRVSFMHFFDGFRTSHEVQKVKLLADNDLRSLIHDHLILAHRSRALTPDRPVLRGTAQNPDVYFQGR 240 
WD40-rpts                                                                                      

Query      241 EGANPYYNACPEIIQRIMDQFGERTGRHYQIYEYYGANDADRVIVLMGSGCETVHETVDYLNARGEKLGVVKVRLYRPFD 320 
WD40-rpts                                                                                      

Query      321 VQRFVAVLPNSVKAIAVLDRTKEAGSAGEPLYLDVVATIHEAWGDKRGGGAGGPGGAGEAGGENTFSYPKIIGGRYGLSS 400 
WD40-rpts                                                                                      

Query      401 KEFTPAMVKGIFDNLAEVKPKNHFTIGINDDVSHTSLSFDPNFSTESDNVVRAMFYGLGSDGTVGANKNSIKIIGEETDN 480 
WD40-rpts                                                                                      

Query      481 YAQGYFVYDSKKSGSMTVSHLRFGKEPIRSTYLIDQANFIGCHHWGFLERIDILKAAIPGATLLLNSPYNADNVWENLPL 560 
WD40-rpts                                                                                      

Query      561 KVQQQIIDKHLKLYVINASQVARESGMGGRINTIMQVCFFALAGVLPQEEAIAKIKQAIEKTYGKKGVEVVRMNLQAVDN 640 
WD40-rpts                                                                                      

Query      641 TLGNLHKVDVPQTIKNQQSTINNPRLLDSAPEFVREVLGKIMVWEGDDLPVSTLPVDGTFPVGTAKWEKRNVAEEIPVWE 720 
WD40-rpts                                                                                      

Query      721 PDVCVQCGKCVMVCPHSAIRAKAYQADELVNAPETFKSTGAKDKDFANQKFTIQVAPEDCTGCTICVNICPAKDKSEPLR 800 
WD40-rpts                                                                                      

Query      801 KAINMAQQLPLQEQERKNWDFFLSLPNPDRRSLKLNQIRQQQLQEPLFEFSGACAGCGETPYLKLLTQLFGDRAVIANAT 880 
WD40-rpts                                                                                      

Query      881 GCSSIYGGNLPTTPWTTNAQGRGPAWSNNLFEDNAEFGFGFRLSLDKQAEFAAELLQQLGSEIDENLVYSILKAEQKSEA 960 
WD40-rpts                                                                                      

Query      961 DIWEQRERIELLQQKLDEIVTFDPNRSTERLALSGAEVSRSLKSKIQNLKSLANYLVRKSVWIVGGDGWAYDIDFGGIDH 1040
WD40-rpts                                                                                      

Query     1041 VIASGRNVNILVMDTEVYSNTGGQSSKATPRAAVAKYAASGKPAPKKDLGMIAMTYGNVYVASVALGARDEHTLKAFLEA 1120
WD40-rpts                                                                                      

Query     1121 EAYDGPSIIIAYSHCIAHGINMTTGMNHQKTLVESGRWLLYRHNPELLNQGKNPLQLDMRSPTQSVEHSMYQENRFKMLT 1200
WD40-rpts                                                                                      

Query     1201 KSKPDVAKHLLQQAQAEVNARWQMYQYLAKRDIPTA 1236
WD40-rpts                                          

1 WD40-repeats found in QUERY=gi_186684257_ref_YP_001867453.1_ (Len=1236):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    88-154      3.63  264.43  0.01689       25.0%     28.36

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   88-154    TGSLSTTFTASQGLLLMIPNFYKIAGELTSAVVHVAARSLATHALSIFGDHSDVMAARATGFALLCS

   WD40 Template    TGECLRTLSG-----------------HTSGVTSVSFSPDGKRLVSGSED----------GTIKVWD