Input parameters:

  Query = gi_186684123_ref_YP_001867319.1_ (Len=499)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186684123_ref_YP_001867319.1_, Len=499):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTKSKTFIQPLDRIAIALMLLLSVLIGLIILQGDVVTARVRDFTWQNQQIGAEDNSFTLTFSRPMETKSVEDNLKIEPPL 80  
WD40-rpts                                                                                      

Query       81 AGKFSWAGRRMVYTLLTPAPYGTNYKLQLQGAKDKFAQQEGKNRLIQAFTGSFRTRDRVILYIGTNQEEQGRLVLYNLTQ 160 
WD40-rpts                                                                                    (_

Query      161 EQKRVLTPKDLIAMDFESFPDGEKILFSARASNNEDLLSAQLYTVTTGVSSKSGQEAQPGGKVDLVLDSKDYQNLKFDLS 240 
WD40-rpts      ___________________WD 1____________________)                                    

Query      241 PDGQTIVIQRGNKNNPGDFGLWFMPATSDGSAEKPTPKRLKSQPGGDFTITPDSKAVAVAQGQGAAILPLQGDASKPLDF 320 
WD40-rpts                                                                            (_________

Query      321 LPQFGLVQAFSKDGSQAAMVKFNTDYTRDLFLVTNQGVQKQLLKTTGSILSCQFDIASPTLYCLLTQLVSKEQYIEQPYV 400 
WD40-rpts      _________WD 2__________________)  (_________________WD 3_________________)      

Query      401 VAIDLKTGQQKPLLVLPPAQRNVQMSLSADGLGLLFDQVVPQANPPVSLPTNTLKTDDGDVIATSSLWLMPLLPIADAAT 480 
WD40-rpts                                                                                      

Query      481 VEIRPEQLPLAGFHPRWLP 499 
WD40-rpts                         

3 WD40-repeats found in QUERY=gi_186684123_ref_YP_001867319.1_ (Len=499):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   159-204      4.23  289.53  0.00778       17.5%     41.88
  WD 2:  Seg 20   311-352      2.91  234.87  0.04173       20.0%     18.99
  WD 3:  Seg 22   355-394      3.01  238.99  0.03682       15.0%     35.36

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  159-204    TQEQKRVLTPKDLIAMDFESFPDGEKIL--FSARASNNEDLLSAQLYT
   WD 2  311-352    QGDASKPLDFLPQFGLVQAFSKDGSQAAMVKFNTDYTR------DLFL
   WD 3  355-394    NQGVQKQLLKTTGSILSCQFDIASPTLY--CLLTQLVS------KEQY

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLV--SGSEDGTI------KVWD