Input parameters:

  Query = gi_186684008_ref_YP_001867204.1_ (Len=1561)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186684008_ref_YP_001867204.1_, Len=1561):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNNQPMNQEQKITANINSRDTYQGQKWLVEERDACGVGFIAHRQNHTSHEIVEKALAALTCLEHRGGCSADRDSGDGAGV 80  
WD40-rpts                                                                                      

Query       81 LTAIPWDLFQQDFAQRGKEFPSTNNIAVGMIFLPQDQEAAQKARAAVEQVATEEKLIVLGWRVVPVQSDLLGVQARENQP 160 
WD40-rpts                                                                                      

Query      161 QIEQVLLASVDKSSDELERQLYITRRRISKVATNISEEFYICSLSSRTIVYKGMVRSAVLGEFYQDLKNPVYKSAFAVYH 240 
WD40-rpts                                                                                      

Query      241 RRFSTNTMPKWPLAQPMRLLGHNGEINTLLGNINWMMAREASLNHPVWGDRIKELKPLVHIDNSDSATLDNVLELLVCSG 320 
WD40-rpts                                                                                      

Query      321 RTPLEALMIMVPEAYQNQPSLHESPEIVDFYEYYSGLQEAWDGPALLVFSDGKKVGATLDRNGLRPARYLITKDDYIVVA 400 
WD40-rpts                                                                                      

Query      401 SEAGVVDFPEADIVEKGRLGPGQMIAVDLVNHEVLKNWEIKQRIAKQHPYGEWLQQYRQELKSLVISHPSLVNGNGKGQM 480 
WD40-rpts                                                                                      

Query      481 TNDSGQLTIDKQTLLQLQTAFGYTTEDVEMVIQPMAIAGSEPTFCMGDDIPLAVLSTKSHLLYDYFKQRFAQVTNPAIDP 560 
WD40-rpts                                                                                      

Query      561 LREKLVMSLKVELGERGNLLEPKPEYARRLKLESPVLTDGELEAIKLSGFATAELSTLFAIANGPEGLKAAVESLQAQAA 640 
WD40-rpts                                                                                      

Query      641 ESVRAGAKILILSDKENDGITTEYTYIPPLLAVGAVHHHLIREGLRMKTSLIVNTAQCWSTHHFACLIGYGAGAVCPYMA 720 
WD40-rpts                                                                                      

Query      721 LDTVRDWCIDPRTQKLMGVQKIPTLTVEQALGNYRKAVESGLLKILSKMGISLLSSYQAAQIFEAIGIGKDLIELGFRGT 800 
WD40-rpts                                                                                      

Query      801 TSRIGGLSVSELADEVLSFHVKAFPELTTKKLENLGFVQYRPGGEYHMNSPEMVKALHKALDGKNYDHYEVYKKHLQGRP 880 
WD40-rpts                                                                                      

Query      881 VTALRDLLDFQGERTPISIEEVESVAEIVKRFCTGGMSLGALSREAHETLAIAMNRIGGKSNSGEGGEDPVRYKVLDDVD 960 
WD40-rpts                                                                                      

Query      961 ESGNSPTLPHLKGLRNGDKAFSAIKQVASGRFGVTPEYLVNAKQIEIKIAQGAKPGEGGQLPGPKVSQYIAMLRRSKPGV 1040
WD40-rpts                                                                                      

Query     1041 TLISPPPHHDIYSIEDLAQLIFDLHQINPKAKVSVKLVSEVGIGTIAAGVAKANADIIQVSGHDGGTGASPLSSIKHAGS 1120
WD40-rpts                                                          (___________________________

Query     1121 PWELGLSEVHRVLMENSLRDRVILRVDGGLKSGWDVVIGALMGAEEFGFGSIAMIAEGCIMARICHTNNCPVGVASQKEE 1200
WD40-rpts      _______WD 1_________________________________)                                   

Query     1201 LRKRFTGIPEQVVNFFYFIAEEVRSLLARLGYRSLSEIIGRADLLKLRPEAKLTKTRSLNLDCLLKLPDTRDNRSWLLHE 1280
WD40-rpts                                                                                      

Query     1281 EVHSNGVVLDDKFLADPDIQAAIRDQSSVKKTYPIVNTDRTVGTRLAGAIASQYGDSGFDGQINLKFTGSVGQSFGAFNL 1360
WD40-rpts                                                                                      

Query     1361 PGISLSLEGEANDYVGKGMHGGEIIIKPPTDATYNASQNVIVGNTCLYGATGGMLFANGQAGERFAVRNSKGIAVIEGAG 1440
WD40-rpts                                                                                      

Query     1441 DHCCEYMTGGVIVVLGKVGRNVAAGMTGGLAYFLDEDDSFRELVNPEIVKIQRVITEVGAKQLQELIQTHAERTGSLKAK 1520
WD40-rpts                                                                                      

Query     1521 KILQNWQEFLPKFWQLVPPSEADSPEANPEKITELSLVTSH 1561
WD40-rpts                                               

1 WD40-repeats found in QUERY=gi_186684008_ref_YP_001867204.1_ (Len=1561):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 22  1093-1165     3.52  260.10  0.01929       25.0%     14.90

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1093-1165   ANADIIQVSGHDGGTGASPLSSIKHAGSPWELGLSEVHRVLMENSLRDRVILRVDGGLKSGWDVVIGALMGAE

   WD40 Template    TGECLRTLSGHTSGVTSVS-------FSP---------------DGKRLVSGSEDGTIKV-----------WD